Rh6AG013400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
1428289 .. 1428952
664 bp
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UTR
Exon/CDS
Intron
Rh6AG013400.1

Sequence Viewer

Length: 372 bp
ATGAGTCGCCAAAACAAAAGTTGGAAGGTTCATCACCAAGATGAAAATAACAGTTGGGAAAAGGAATTGGTGGCAAAATATGGGTGTATGGAACATATGTCAGAATTCAAATGTACCAAACCTAAGGACACTGCCAAGTATGAAAATGAAGAAGAACCATCAAAAGATGAAAGATACAATTGGGAAGAGGAATTGGATGGGTTTATGGAGGAGCATGTATCGGGATTCACGTACACCAAACCTAAGGAGACTAAGAAATCTGAAATTGAAGAAGAGGCACCAATAGAAGAGAATTACAGATGGCCAAGGGAAGAGGCCGGATTTGGAAGTTGTAGAAGCACTGAAAGAAGAAAACAACAAATCATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.8

Weight (kDa)

5.14

Isoelectric Point (pI)

78.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 2 cut(s) 115, 233
AgsI TTSAA 2 cut(s) 109, 269
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 2 cut(s) 302, 315
ApoI RAATTY 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 26
AxyI CCTNAGG 2 cut(s) 123, 243
BalI TGGCCA 1 cut(s) 304
BanI GGYRCC 1 cut(s) 277
BccI CCATC 3 cut(s) 166, 191, 294
BcoDI GTCTC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 305
Bse21I CCTNAGG 2 cut(s) 123, 243
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 224
BshFI GGCC 2 cut(s) 304, 317
BshNI GGYRCC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 2 cut(s) 304, 317
BspANI GGCC 2 cut(s) 304, 317
BspLI GGNNCC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 4 cut(s) 180, 267, 282, 306
BstBAI YACGTR 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 123, 243, 252
BstF5I GGATG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 218
Bsu36I CCTNAGG 2 cut(s) 123, 243
BsuRI GGCC 2 cut(s) 304, 317
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 339
Csp6I GTAC 2 cut(s) 114, 232
CviAII CATG 1 cut(s) 215
CviJI RGCY 2 cut(s) 304, 317
CviKI_1 RGCY 2 cut(s) 304, 317
CviQI GTAC 2 cut(s) 114, 232
DdeI CTNAG 3 cut(s) 123, 243, 252
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 4 cut(s) 180, 267, 282, 306
EarI CTCTTC 4 cut(s) 180, 267, 282, 306
Eco130I CCWWGG 1 cut(s) 305
Eco81I CCTNAGG 2 cut(s) 123, 243
EcoRI GAATTC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 1 cut(s) 218
FaiI YATR 7 cut(s) 81, 89, 96, 98, 141, 206, 216
FatI CATG 1 cut(s) 214
FauNDI CATATG 1 cut(s) 96
FokI GGATG 1 cut(s) 209
HaeIII GGCC 2 cut(s) 304, 317
HapII CCGG 1 cut(s) 318
Hin1II CATG 1 cut(s) 218
HinfI GANTC 2 cut(s) 4, 225
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 103, 262
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 230
HpyF3I CTNAG 3 cut(s) 123, 243, 252
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 1 cut(s) 218
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 1 cut(s) 331
MaeII ACGT 1 cut(s) 230
MboII GAAGA 8 cut(s) 161, 164, 197, 281, 284, 299, 323, 360
MfeI CAATTG 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 6 cut(s) 65, 104, 178, 191, 264, 292
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 181, 202, 268, 307
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MslI CAYNNNNRTG 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 304
MspI CCGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 178
NdeI CATATG 1 cut(s) 96
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PfeI GAWTC 1 cut(s) 225
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 2 cut(s) 115, 233
RsaNI GTAC 2 cut(s) 114, 232
RseI CAYNNNNRTG 1 cut(s) 39
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 30, 124, 233, 244
SgeI CNNG 7 cut(s) 50, 148, 227, 234, 241, 318, 330
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 6 cut(s) 65, 104, 178, 191, 264, 292
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 233
TasI AATT 6 cut(s) 65, 104, 178, 191, 264, 292
TfiI GAWTC 1 cut(s) 225
TscAI CASTG 2 cut(s) 136, 346
TspDTI ATGAA 5 cut(s) 20, 57, 156, 162, 183
TspRI CASTG 2 cut(s) 136, 346
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.