Rroxscaffold_3G00260950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000977
Physical Location & Seq
Reverse (-)
55299550 .. 55308231
8682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260950.1

Sequence Viewer

Length: 231 bp
ATGGATAAGGTCGAGTTCAAGGATTTACTCTCCATGCATCTCTGGAAACTTTGCACAAAATACTCGAGCCCTAGTGTTCCAGTGTTTGCAGGTGGTATCCTTGGGCTGTCGATTGACATCCTCCTCATTCAGGAGAAAATGAAGAAGAGGATGAAAGATTTTAGGGCAAAGCTCGTTGAAGAGGCATATCATTGGATACTCATCTTCAGTCATACAAGTGACTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.9

Weight (kDa)

7.89

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 19, 179
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 64
BanII GRGCYC 1 cut(s) 71
BciVI GTATCC 2 cut(s) 107, 189
BfaI CTAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 80
BfuI GTATCC 2 cut(s) 107, 189
BmeT110I CYCGRG 1 cut(s) 64
BmsI GCATC 1 cut(s) 46
BsaBI GATNNNNATC 2 cut(s) 116, 200
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 80
Bse8I GATNNNNATC 2 cut(s) 116, 200
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 117, 156
BseJI GATNNNNATC 2 cut(s) 116, 200
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 140, 174
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 117, 156
BsuI GTATCC 2 cut(s) 107, 189
BtsCI GGATG 2 cut(s) 117, 156
BtsIMutI CAGTG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 80
CviAII CATG 1 cut(s) 34
CviJI RGCY 3 cut(s) 69, 106, 172
CviKI_1 RGCY 3 cut(s) 69, 106, 172
Eam1104I CTCTTC 2 cut(s) 140, 174
EarI CTCTTC 2 cut(s) 140, 174
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 35, 187, 213
FatI CATG 1 cut(s) 33
FokI GGATG 2 cut(s) 104, 163
FriOI GRGCYC 1 cut(s) 71
FspBI CTAG 1 cut(s) 72
Hin1II CATG 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 43, 131
HpyCH4V TGCA 3 cut(s) 37, 54, 89
Hsp92II CATG 1 cut(s) 37
LpnPI CCDG 4 cut(s) 28, 75, 93, 116
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 4 cut(s) 154, 157, 191, 196
MhlI GDGCHC 1 cut(s) 71
MnlI CCTC 4 cut(s) 131, 134, 141, 175
Mph1103I ATGCAT 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 216
NlaIII CATG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 80
PspXI VCTCGAGB 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 71
SetI ASST 3 cut(s) 12, 94, 174
SfaNI GCATC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 100
TaqI TCGA 3 cut(s) 12, 65, 110
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 155, 167
TspRI CASTG 1 cut(s) 87
XagI CCTNNNNNAGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 64
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.