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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 43 |
| AccB1I | GGYRCC | 1 cut(s) | 43 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AccI | GTMKAC | 1 cut(s) | 351 |
| AciI | CCGC | 3 cut(s) | 212, 475, 580 |
| AclWI | GGATC | 2 cut(s) | 73, 1214 |
| AcoI | YGGCCR | 3 cut(s) | 980, 1179, 2070 |
| AcsI | RAATTY | 3 cut(s) | 290, 1616, 1756 |
| AcvI | CACGTG | 1 cut(s) | 909 |
| AfaI | GTAC | 5 cut(s) | 45, 196, 667, 1766, 1772 |
| AflIII | ACRYGT | 1 cut(s) | 1678 |
| AgsI | TTSAA | 6 cut(s) | 947, 1324, 1399, 1415, 1622, 1781 |
| AhlI | ACTAGT | 2 cut(s) | 1925, 1937 |
| Alw21I | GWGCWC | 1 cut(s) | 914 |
| Alw26I | GTCTC | 6 cut(s) | 710, 776, 798, 920, 1291, 1497 |
| Alw44I | GTGCAC | 1 cut(s) | 910 |
| AlwI | GGATC | 2 cut(s) | 73, 1214 |
| Ama87I | CYCGRG | 2 cut(s) | 1433, 1985 |
| AoxI | GGCC | 4 cut(s) | 21, 980, 1179, 2070 |
| ApaLI | GTGCAC | 1 cut(s) | 910 |
| ApeKI | GCWGC | 2 cut(s) | 1751, 2024 |
| ApoI | RAATTY | 3 cut(s) | 290, 1616, 1756 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1475, 1507 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1266 |
| Asp718I | GGTACC | 1 cut(s) | 43 |
| AspLEI | GCGC | 1 cut(s) | 1984 |
| AspS9I | GGNCC | 2 cut(s) | 22, 1228 |
| AsuHPI | GGTGA | 1 cut(s) | 1186 |
| AvaI | CYCGRG | 2 cut(s) | 1433, 1985 |
| AvaII | GGWCC | 1 cut(s) | 1228 |
| AxyI | CCTNAGG | 1 cut(s) | 163 |
| BaeGI | GKGCMC | 1 cut(s) | 914 |
| BalI | TGGCCA | 2 cut(s) | 982, 2072 |
| BanI | GGYRCC | 1 cut(s) | 43 |
| BauI | CACGAG | 1 cut(s) | 479 |
| BbrPI | CACGTG | 1 cut(s) | 909 |
| BbsI | GAAGAC | 1 cut(s) | 1998 |
| Bbv12I | GWGCWC | 1 cut(s) | 914 |
| BbvI | GCAGC | 2 cut(s) | 1763, 2011 |
| BccI | CCATC | 7 cut(s) | 34, 137, 844, 869, 972, 1171, 1219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1966, 2000 |
| BciVI | GTATCC | 1 cut(s) | 1384 |
| BcoDI | GTCTC | 6 cut(s) | 710, 776, 798, 920, 1291, 1497 |
| BcuI | ACTAGT | 2 cut(s) | 1925, 1937 |
| BfaI | CTAG | 4 cut(s) | 396, 402, 1926, 1938 |
| BfoI | RGCGCY | 1 cut(s) | 1985 |
| BfuI | GTATCC | 1 cut(s) | 1384 |
| BglII | AGATCT | 1 cut(s) | 1096 |
| BisI | GCNGC | 4 cut(s) | 212, 476, 1752, 2025 |
| BlsI | GCNGC | 4 cut(s) | 213, 477, 1753, 2026 |
| BmcAI | AGTACT | 1 cut(s) | 1772 |
| Bme18I | GGWCC | 1 cut(s) | 1228 |
| BmeT110I | CYCGRG | 2 cut(s) | 1433, 1985 |
| BmgT120I | GGNCC | 2 cut(s) | 22, 1228 |
| BmiI | GGNNCC | 3 cut(s) | 24, 45, 1230 |
| BmrI | ACTGGG | 1 cut(s) | 1168 |
| BmsI | GCATC | 3 cut(s) | 504, 1453, 1964 |
| BmuI | ACTGGG | 1 cut(s) | 1168 |
| BpiI | GAAGAC | 1 cut(s) | 1998 |
| BpmI | CTGGAG | 3 cut(s) | 491, 1305, 1858 |
| BpuEI | CTTGAG | 3 cut(s) | 1295, 1479, 1766 |
| Bsa29I | ATCGAT | 1 cut(s) | 135 |
| BsaAI | YACGTR | 2 cut(s) | 909, 2063 |
| BsaBI | GATNNNNATC | 1 cut(s) | 77 |
| BsaI | GGTCTC | 1 cut(s) | 776 |
| BsaJI | CCNNGG | 2 cut(s) | 983, 1109 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1856, 1886 |
| Bse1I | ACTGG | 4 cut(s) | 602, 1163, 1288, 1672 |
| Bse21I | CCTNAGG | 1 cut(s) | 163 |
| Bse3DI | GCAATG | 2 cut(s) | 1213, 1473 |
| Bse8I | GATNNNNATC | 1 cut(s) | 77 |
| BseCI | ATCGAT | 1 cut(s) | 135 |
| BseDI | CCNNGG | 2 cut(s) | 983, 1109 |
| BseGI | GGATG | 3 cut(s) | 45, 880, 1048 |
| BseJI | GATNNNNATC | 1 cut(s) | 77 |
| BseMI | GCAATG | 2 cut(s) | 1213, 1473 |
| BseMII | CTCAG | 3 cut(s) | 46, 814, 1292 |
| BseNI | ACTGG | 4 cut(s) | 602, 1163, 1288, 1672 |
| BseRI | GAGGAG | 3 cut(s) | 902, 1421, 1523 |
| BseSI | GKGCMC | 1 cut(s) | 914 |
| BseXI | GCAGC | 2 cut(s) | 1763, 2011 |
| BshFI | GGCC | 4 cut(s) | 23, 982, 1181, 2072 |
| BshNI | GGYRCC | 1 cut(s) | 43 |
| BshVI | ATCGAT | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 914 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1433, 1985 |
| BsmAI | GTCTC | 6 cut(s) | 710, 776, 798, 920, 1291, 1497 |
| BsnI | GGCC | 4 cut(s) | 23, 982, 1181, 2072 |
| Bso31I | GGTCTC | 1 cut(s) | 776 |
| BsoBI | CYCGRG | 2 cut(s) | 1433, 1985 |
| Bsp1286I | GDGCHC | 1 cut(s) | 914 |
| Bsp143I | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| BspACI | CCGC | 3 cut(s) | 212, 475, 580 |
| BspANI | GGCC | 4 cut(s) | 23, 982, 1181, 2072 |
| BspCNI | CTCAG | 3 cut(s) | 45, 813, 1293 |
| BspDI | ATCGAT | 1 cut(s) | 135 |
| BspLI | GGNNCC | 3 cut(s) | 24, 45, 1230 |
| BspPI | GGATC | 2 cut(s) | 73, 1214 |
| BspT107I | GGYRCC | 1 cut(s) | 43 |
| BspTNI | GGTCTC | 1 cut(s) | 776 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BsrDI | GCAATG | 2 cut(s) | 1213, 1473 |
| BsrI | ACTGG | 4 cut(s) | 602, 1163, 1288, 1672 |
| BssECI | CCNNGG | 2 cut(s) | 983, 1109 |
| BssMI | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| BssNAI | GTATAC | 1 cut(s) | 352 |
| BssSI | CACGAG | 1 cut(s) | 479 |
| BssT1I | CCWWGG | 2 cut(s) | 983, 1109 |
| Bst1107I | GTATAC | 1 cut(s) | 352 |
| Bst2BI | CACGAG | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 9 cut(s) | 331, 532, 665, 686, 725, 734, 1198, 1841, 1895 |
| Bst6I | CTCTTC | 5 cut(s) | 858, 960, 984, 1319, 1962 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1660 |
| BstBAI | YACGTR | 2 cut(s) | 909, 2063 |
| BstC8I | GCNNGC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 7 cut(s) | 32, 163, 780, 800, 930, 1301, 2076 |
| BstF5I | GGATG | 3 cut(s) | 45, 880, 1048 |
| BstH2I | RGCGCY | 1 cut(s) | 1985 |
| BstHHI | GCGC | 1 cut(s) | 1984 |
| BstKTI | GATC | 7 cut(s) | 81, 567, 1099, 1186, 1222, 1453, 1651 |
| BstMAI | GTCTC | 6 cut(s) | 710, 776, 798, 920, 1291, 1497 |
| BstMBI | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 475, 492, 607, 1212, 1552, 1660, 1793, 2030 |
| BstNSI | RCATGY | 3 cut(s) | 896, 1682, 2059 |
| BstSLI | GKGCMC | 1 cut(s) | 914 |
| BstV1I | GCAGC | 2 cut(s) | 1763, 2011 |
| BstV2I | GAAGAC | 1 cut(s) | 1998 |
| BstX2I | RGATCY | 2 cut(s) | 78, 1096 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1110 |
| BstYI | RGATCY | 2 cut(s) | 78, 1096 |
| BstZ17I | GTATAC | 1 cut(s) | 352 |
| Bsu15I | ATCGAT | 1 cut(s) | 135 |
| Bsu36I | CCTNAGG | 1 cut(s) | 163 |
| BsuI | GTATCC | 1 cut(s) | 1384 |
| BsuRI | GGCC | 4 cut(s) | 23, 982, 1181, 2072 |
| BsuTUI | ATCGAT | 1 cut(s) | 135 |
| BtsCI | GGATG | 3 cut(s) | 45, 880, 1048 |
| BtsI | GCAGTG | 3 cut(s) | 807, 1222, 2007 |
| BtsIMutI | CAGTG | 7 cut(s) | 609, 807, 1013, 1222, 1281, 1900, 2007 |
| Cac8I | GCNNGC | 1 cut(s) | 246 |
| CfoI | GCGC | 1 cut(s) | 1984 |
| Cfr13I | GGNCC | 2 cut(s) | 22, 1228 |
| ClaI | ATCGAT | 1 cut(s) | 135 |
| Csp6I | GTAC | 5 cut(s) | 44, 195, 666, 1765, 1771 |
| CviAII | CATG | 7 cut(s) | 358, 893, 1138, 1418, 1679, 1952, 2056 |
| CviQI | GTAC | 5 cut(s) | 44, 195, 666, 1765, 1771 |
| DdeI | CTNAG | 7 cut(s) | 32, 163, 780, 800, 930, 1301, 2076 |
| DpnI | GATC | 7 cut(s) | 80, 566, 1098, 1185, 1221, 1452, 1650 |
| DpnII | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| EaeI | YGGCCR | 3 cut(s) | 980, 1179, 2070 |
| Eam1104I | CTCTTC | 5 cut(s) | 858, 960, 984, 1319, 1962 |
| EarI | CTCTTC | 5 cut(s) | 858, 960, 984, 1319, 1962 |
| Eco130I | CCWWGG | 2 cut(s) | 983, 1109 |
| Eco31I | GGTCTC | 1 cut(s) | 776 |
| Eco32I | GATATC | 1 cut(s) | 171 |
| Eco47I | GGWCC | 1 cut(s) | 1228 |
| Eco72I | CACGTG | 1 cut(s) | 909 |
| Eco81I | CCTNAGG | 1 cut(s) | 163 |
| Eco88I | CYCGRG | 2 cut(s) | 1433, 1985 |
| EcoRV | GATATC | 1 cut(s) | 171 |
| EcoT14I | CCWWGG | 2 cut(s) | 983, 1109 |
| EcoT22I | ATGCAT | 1 cut(s) | 497 |
| ErhI | CCWWGG | 2 cut(s) | 983, 1109 |
| FaeI | CATG | 7 cut(s) | 361, 896, 1141, 1421, 1682, 1955, 2059 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1254, 1286 |
| FatI | CATG | 7 cut(s) | 357, 892, 1137, 1417, 1678, 1951, 2055 |
| FblI | GTMKAC | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 4 cut(s) | 212, 476, 1752, 2025 |
| FokI | GGATG | 3 cut(s) | 52, 887, 1055 |
| Fsp4HI | GCNGC | 4 cut(s) | 212, 476, 1752, 2025 |
| FspBI | CTAG | 4 cut(s) | 396, 402, 1926, 1938 |
| GlaI | GCGC | 1 cut(s) | 1983 |
| GluI | GCNGC | 4 cut(s) | 212, 476, 1752, 2025 |
| GsuI | CTGGAG | 3 cut(s) | 491, 1305, 1858 |
| HaeII | RGCGCY | 1 cut(s) | 1985 |
| HaeIII | GGCC | 4 cut(s) | 23, 982, 1181, 2072 |
| HhaI | GCGC | 1 cut(s) | 1984 |
| Hin1II | CATG | 7 cut(s) | 361, 896, 1141, 1421, 1682, 1955, 2059 |
| Hin6I | GCGC | 1 cut(s) | 1982 |
| HinP1I | GCGC | 1 cut(s) | 1982 |
| HincII | GTYRAC | 1 cut(s) | 185 |
| HindII | GTYRAC | 1 cut(s) | 185 |
| HindIII | AAGCTT | 3 cut(s) | 1497, 1560, 2015 |
| HinfI | GANTC | 5 cut(s) | 125, 740, 903, 1517, 1807 |
| HphI | GGTGA | 1 cut(s) | 1186 |
| Hpy166II | GTNNAC | 5 cut(s) | 185, 327, 352, 912, 1935 |
| Hpy188I | TCNGA | 9 cut(s) | 35, 387, 550, 803, 940, 1081, 1096, 1224, 2041 |
| Hpy188III | TCNNGA | 4 cut(s) | 510, 900, 1274, 1454 |
| Hpy8I | GTNNAC | 5 cut(s) | 185, 327, 352, 912, 1935 |
| HpyAV | CCTTC | 2 cut(s) | 7, 1393 |
| HpyCH4III | ACNGT | 9 cut(s) | 331, 532, 665, 686, 725, 734, 1198, 1841, 1895 |
| HpyCH4IV | ACGT | 2 cut(s) | 908, 2062 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 475, 492, 607, 1212, 1552, 1660, 1793, 2030 |
| HpyF3I | CTNAG | 7 cut(s) | 32, 163, 780, 800, 930, 1301, 2076 |
| HpySE526I | ACGT | 2 cut(s) | 908, 2062 |
| Hsp92II | CATG | 7 cut(s) | 361, 896, 1141, 1421, 1682, 1955, 2059 |
| HspAI | GCGC | 1 cut(s) | 1982 |
| KpnI | GGTACC | 1 cut(s) | 47 |
| Kzo9I | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| LmnI | GCTCC | 7 cut(s) | 241, 472, 796, 889, 1345, 1456, 1588 |
| Lsp1109I | GCAGC | 2 cut(s) | 1763, 2011 |
| LweI | GCATC | 3 cut(s) | 504, 1453, 1964 |
| MaeI | CTAG | 4 cut(s) | 396, 402, 1926, 1938 |
| MaeII | ACGT | 2 cut(s) | 908, 2062 |
| MaeIII | GTNAC | 7 cut(s) | 728, 1061, 1853, 1889, 1895, 2058, 2063 |
| MalI | GATC | 7 cut(s) | 80, 566, 1098, 1185, 1221, 1452, 1650 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| MfeI | CAATTG | 2 cut(s) | 856, 1169 |
| MflI | RGATCY | 2 cut(s) | 78, 1096 |
| MhlI | GDGCHC | 1 cut(s) | 914 |
| MlsI | TGGCCA | 2 cut(s) | 982, 2072 |
| MluNI | TGGCCA | 2 cut(s) | 982, 2072 |
| MlyI | GAGTC | 1 cut(s) | 734 |
| MmeI | TCCRAC | 1 cut(s) | 219 |
| Mox20I | TGGCCA | 2 cut(s) | 982, 2072 |
| Mph1103I | ATGCAT | 1 cut(s) | 497 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1266 |
| MscI | TGGCCA | 2 cut(s) | 982, 2072 |
| MseI | TTAA | 2 cut(s) | 432, 1557 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1950 |
| Msp20I | TGGCCA | 2 cut(s) | 982, 2072 |
| MspA1I | CMGCKG | 1 cut(s) | 1241 |
| MunI | CAATTG | 2 cut(s) | 856, 1169 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 475, 492, 607, 1212, 1552, 1660, 1793, 2030 |
| NdeII | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| NlaIII | CATG | 7 cut(s) | 361, 896, 1141, 1421, 1682, 1955, 2059 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 45, 1230 |
| NmuCI | GTSAC | 2 cut(s) | 1895, 2063 |
| NsiI | ATGCAT | 1 cut(s) | 497 |
| NspI | RCATGY | 3 cut(s) | 896, 1682, 2059 |
| PaeR7I | CTCGAG | 2 cut(s) | 1433, 1985 |
| PciI | ACATGT | 1 cut(s) | 1678 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 905 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1266 |
| PfeI | GAWTC | 4 cut(s) | 125, 903, 1517, 1807 |
| PkrI | GCNGC | 4 cut(s) | 213, 477, 1753, 2026 |
| PleI | GAGTC | 1 cut(s) | 734 |
| PmaCI | CACGTG | 1 cut(s) | 909 |
| PmlI | CACGTG | 1 cut(s) | 909 |
| PpsI | GAGTC | 1 cut(s) | 734 |
| Ppu21I | YACGTR | 2 cut(s) | 909, 2063 |
| PscI | ACATGT | 1 cut(s) | 1678 |
| PspCI | CACGTG | 1 cut(s) | 909 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 45, 1230 |
| PspPI | GGNCC | 2 cut(s) | 22, 1228 |
| PspXI | VCTCGAGB | 2 cut(s) | 1433, 1985 |
| PsuI | RGATCY | 2 cut(s) | 78, 1096 |
| PvuII | CAGCTG | 1 cut(s) | 1241 |
| RsaI | GTAC | 5 cut(s) | 45, 196, 667, 1766, 1772 |
| RsaNI | GTAC | 5 cut(s) | 44, 195, 666, 1765, 1771 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1950 |
| SaqAI | TTAA | 2 cut(s) | 432, 1557 |
| SatI | GCNGC | 4 cut(s) | 212, 476, 1752, 2025 |
| Sau3AI | GATC | 7 cut(s) | 78, 564, 1096, 1183, 1219, 1450, 1648 |
| Sau96I | GGNCC | 2 cut(s) | 22, 1228 |
| ScaI | AGTACT | 1 cut(s) | 1772 |
| SchI | GAGTC | 1 cut(s) | 734 |
| SduI | GDGCHC | 1 cut(s) | 914 |
| SfaNI | GCATC | 3 cut(s) | 504, 1453, 1964 |
| Sfr274I | CTCGAG | 2 cut(s) | 1433, 1985 |
| SinI | GGWCC | 1 cut(s) | 1228 |
| SlaI | CTCGAG | 2 cut(s) | 1433, 1985 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1950 |
| SmlI | CTYRAG | 5 cut(s) | 1274, 1433, 1494, 1745, 1985 |
| SmoI | CTYRAG | 5 cut(s) | 1274, 1433, 1494, 1745, 1985 |
| SpeI | ACTAGT | 2 cut(s) | 1925, 1937 |
| SsiI | CCGC | 3 cut(s) | 212, 475, 580 |
| SspMI | CTAG | 4 cut(s) | 396, 402, 1926, 1938 |
| StyI | CCWWGG | 2 cut(s) | 983, 1109 |
| TaaI | ACNGT | 9 cut(s) | 331, 532, 665, 686, 725, 734, 1198, 1841, 1895 |
| TaiI | ACGT | 2 cut(s) | 911, 2065 |
| TaqI | TCGA | 6 cut(s) | 135, 660, 1434, 1476, 1986, 2050 |
| TaqII | GACCGA | 1 cut(s) | 135 |
| TatI | WGTACW | 2 cut(s) | 665, 1770 |
| TauI | GCSGC | 2 cut(s) | 214, 478 |
| TfiI | GAWTC | 4 cut(s) | 125, 903, 1517, 1807 |
| Tru1I | TTAA | 2 cut(s) | 432, 1557 |
| Tru9I | TTAA | 2 cut(s) | 432, 1557 |
| TscAI | CASTG | 7 cut(s) | 609, 814, 1020, 1222, 1288, 1900, 2014 |
| TseFI | GTSAC | 2 cut(s) | 1895, 2063 |
| TseI | GCWGC | 2 cut(s) | 1751, 2024 |
| Tsp45I | GTSAC | 2 cut(s) | 1895, 2063 |
| TspRI | CASTG | 7 cut(s) | 609, 814, 1020, 1222, 1288, 1900, 2014 |
| VneI | GTGCAC | 1 cut(s) | 910 |
| VpaK11BI | GGWCC | 1 cut(s) | 1228 |
| XapI | RAATTY | 3 cut(s) | 290, 1616, 1756 |
| XceI | RCATGY | 3 cut(s) | 896, 1682, 2059 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 222 |
| XhoI | CTCGAG | 2 cut(s) | 1433, 1985 |
| XmiI | GTMKAC | 1 cut(s) | 351 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1266 |
| XspI | CTAG | 4 cut(s) | 396, 402, 1926, 1938 |
| ZrmI | AGTACT | 1 cut(s) | 1772 |
| Zsp2I | ATGCAT | 1 cut(s) | 497 |