Rmu_sc0001382.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001382.1
OG0000977
Physical Location & Seq
Forward (+)
133991 .. 134593
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001382.1_g000034.1.cds

Sequence Viewer

Length: 603 bp
atgcacgatcagaagcttgatgcaatgcttgttgaagcgaagatgaagtctcaagctttagttgaggagttagattctcactccaagtttgaggaacaaatgctggaaacgcttaaagcttacaaaaaagattgcagaaaatgggagcaagacaataaagacattggtgcaaaatttgaagctgtaatttcagctattagaaaagatcagcagactttgctaactgatcaaggacatgtttgcaagtgcaaggcagaacgcaagaaatgggaaaatgagaaaatctcactcaatgaacagcttgaggcagtgaattcttggtacgagtaccattttgaagtggcaacgacagaaaattattggaatcaatactatatgcaaagggaaaattattacagtatttggttgcgttactatgaggacaacatctacagccttgtcaaaagtaacagtgaccttgctaaaaggctcgaggtagaaattagtttgtccactagttatcacaatcatgtttttgactatgaagagagatgcagggcactcgaggaagacaagaacaatcgagctcactgcaaagctttgtgctgccaatgcctcatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

24.01

Weight (kDa)

5.58

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 173, 313
AfaI GTAC 2 cut(s) 323, 329
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 35, 179, 338
AhlI ACTAGT 1 cut(s) 494
AluBI AGCT 8 cut(s) 16, 56, 119, 182, 194, 301, 566, 578
AluI AGCT 8 cut(s) 16, 56, 119, 182, 194, 301, 566, 578
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 2 cut(s) 470, 542
ApeKI GCWGC 1 cut(s) 585
ApoI RAATTY 2 cut(s) 173, 313
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AvaI CYCGRG 2 cut(s) 470, 542
BaeGI GKGCMC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 572
BcgI CGANNNNNNTGC 4 cut(s) 523, 552, 557, 586
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 54
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 1 cut(s) 586
BlsI GCNGC 1 cut(s) 587
BmeT110I CYCGRG 2 cut(s) 470, 542
BmsI GCATC 2 cut(s) 10, 521
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpuEI CTTGAG 2 cut(s) 36, 323
Bse3DI GCAATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 568
BsiHKCI CYCGRG 2 cut(s) 470, 542
BsmAI GTCTC 1 cut(s) 54
BsoBI CYCGRG 2 cut(s) 470, 542
Bsp1286I GDGCHC 2 cut(s) 541, 568
Bsp143I GATC 3 cut(s) 7, 205, 226
BsrDI GCAATG 1 cut(s) 30
BssMI GATC 3 cut(s) 7, 205, 226
Bst4CI ACNGT 2 cut(s) 398, 452
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 10, 208, 229
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 7, 205, 226
BstMWI GCNNNNNNNGC 3 cut(s) 109, 217, 591
BstNSI RCATGY 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 430
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 572
BstV2I GAAGAC 1 cut(s) 555
BtsI GCAGTG 2 cut(s) 315, 568
BtsIMutI CAGTG 3 cut(s) 315, 457, 568
Csp6I GTAC 2 cut(s) 322, 328
CviAII CATG 2 cut(s) 236, 509
CviQI GTAC 2 cut(s) 322, 328
DpnI GATC 3 cut(s) 9, 207, 228
DpnII GATC 3 cut(s) 7, 205, 226
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 568
Eco53kI GAGCTC 1 cut(s) 566
Eco88I CYCGRG 2 cut(s) 470, 542
EcoICRI GAGCTC 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 2 cut(s) 239, 512
FaiI YATR 6 cut(s) 237, 375, 377, 417, 510, 522
FatI CATG 2 cut(s) 235, 508
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 586
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 1 cut(s) 586
FspBI CTAG 1 cut(s) 495
GluI GCNGC 1 cut(s) 586
Hin1II CATG 2 cut(s) 239, 512
HindIII AAGCTT 4 cut(s) 14, 54, 117, 576
HinfI GANTC 2 cut(s) 74, 364
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 2 cut(s) 12, 602
Hpy8I GTNNAC 1 cut(s) 492
HpyCH4III ACNGT 2 cut(s) 398, 452
HpyCH4V TGCA 9 cut(s) 4, 23, 135, 170, 243, 249, 379, 534, 573
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 217, 591
Hsp92II CATG 2 cut(s) 239, 512
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 7, 205, 226
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 2 cut(s) 89, 520
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 2 cut(s) 10, 521
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 3 cut(s) 410, 446, 452
MalI GATC 3 cut(s) 9, 207, 228
MboI GATC 3 cut(s) 7, 205, 226
MboII GAAGA 3 cut(s) 52, 536, 560
MhlI GDGCHC 2 cut(s) 541, 568
MluCI AATT 6 cut(s) 173, 186, 313, 355, 388, 480
MnlI CCTC 6 cut(s) 58, 85, 298, 412, 466, 538
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 109, 217, 591
NdeII GATC 3 cut(s) 7, 205, 226
NlaIII CATG 2 cut(s) 239, 512
NmuCI GTSAC 1 cut(s) 452
NspI RCATGY 1 cut(s) 239
PaeR7I CTCGAG 2 cut(s) 470, 542
PciI ACATGT 1 cut(s) 235
PfeI GAWTC 2 cut(s) 74, 364
PkrI GCNGC 1 cut(s) 587
PscI ACATGT 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 568
PspXI VCTCGAGB 2 cut(s) 470, 542
RsaI GTAC 2 cut(s) 323, 329
RsaNI GTAC 2 cut(s) 322, 328
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 586
Sau3AI GATC 3 cut(s) 7, 205, 226
SduI GDGCHC 2 cut(s) 541, 568
SfaNI GCATC 2 cut(s) 10, 521
SfcI CTRYAG 1 cut(s) 430
Sfr274I CTCGAG 2 cut(s) 470, 542
SlaI CTCGAG 2 cut(s) 470, 542
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 4 cut(s) 51, 302, 470, 542
SmoI CTYRAG 4 cut(s) 51, 302, 470, 542
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 6 cut(s) 173, 186, 313, 355, 388, 480
SspMI CTAG 1 cut(s) 495
SstI GAGCTC 1 cut(s) 568
TaaI ACNGT 2 cut(s) 398, 452
TaqI TCGA 3 cut(s) 471, 543, 562
TasI AATT 6 cut(s) 173, 186, 313, 355, 388, 480
TfiI GAWTC 2 cut(s) 74, 364
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 3 cut(s) 315, 457, 575
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 585
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 59, 309, 537
TspRI CASTG 3 cut(s) 315, 457, 575
XapI RAATTY 2 cut(s) 173, 313
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 2 cut(s) 470, 542
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.