Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

65168956 .. 65169712

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATGTCTTTGACGTTTCGGGCTGTCTAATTAATCCCCCTATTGCGGCTTTTGTCATCTGTAGACGTGTTAGTGCAATAATATTTGTGAGAAGTGGTTCTTCTATTTACAGTGCTGGTGCTGAAGGGATGATTTGTGAAATCGATTCACTGACAGCAGCAAAGGGTAGATTTTCTGATGGCCTTCTTGATTTCTTATCTGACTGGAAATTTACAGCTGCCTTCGACATTTTATATCTCTATATTCGTAGTTTTATAGAAACTGAGGAGTTGTTTGTAGAAGTTGAATTGTGTGCAAGAGGCACAGATGTCAACACAAACTACTCTCTAACTACTTCGTATCCTTGCTTTGTATTTCAGTCAAGGGAGATTAGAGTTGCTTGGAGAGTGGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

132

Amino Acids

14.8

Weight (kDa)

4.64

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	68
AluBI	AGCT	2 cut(s)	218, 396
AluI	AGCT	2 cut(s)	218, 396
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	158, 218
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	170, 205
BccI	CCATC	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	48, 159, 219
BlsI	GCNGC	3 cut(s)	49, 160, 220
BmgBI	CACGTC	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	144
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	170, 205
BshFI	GGCC	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	170, 205
Bsu15I	ATCGAT	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	118, 149
ClaI	ATCGAT	1 cut(s)	144
CviJI	RGCY	5 cut(s)	24, 50, 183, 218, 396
CviKI_1	RGCY	5 cut(s)	24, 50, 183, 218, 396
DdeI	CTNAG	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	144
FaiI	YATR	3 cut(s)	235, 243, 257
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	48, 159, 219
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	48, 159, 219
GluI	GCNGC	3 cut(s)	48, 159, 219
HaeIII	GGCC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	65, 313
Hpy188I	TCNGA	2 cut(s)	178, 202
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	65, 313
HpyAV	CCTTC	3 cut(s)	119, 194, 232
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	15, 67
HpyCH4V	TGCA	2 cut(s)	77, 296
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	15, 67
LpnPI	CCDG	2 cut(s)	102, 190
Lsp1109I	GCAGC	2 cut(s)	170, 205
MaeII	ACGT	2 cut(s)	15, 67
MboII	GAAGA	1 cut(s)	93
MluCI	AATT	3 cut(s)	30, 209, 287
MnlI	CCTC	2 cut(s)	259, 293
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	49, 160, 220
PshBI	ATTAAT	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	3 cut(s)	48, 159, 219
SetI	ASST	4 cut(s)	18, 70, 220, 398
SfcI	CTRYAG	1 cut(s)	61
SgeI	CNNG	9 cut(s)	33, 80, 129, 200, 217, 309, 357, 375, 393
Sse9I	AATT	3 cut(s)	30, 209, 287
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	18, 70
TaqI	TCGA	2 cut(s)	144, 225
TasI	AATT	3 cut(s)	30, 209, 287
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	118, 156
TseI	GCWGC	2 cut(s)	158, 218
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	118, 156
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.