Rh6BG012300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000977
Physical Location & Seq
Forward (+)
1805919 .. 1808895
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG012300.1

Sequence Viewer

Length: 1104 bp
ATGGCAGCAATGGCCCCCAAACTCAGAGGGATGGTACCCAAAACAGATAATCTCCTCCTAAAGATTGAGATCCTTGCAATTCTTCTTCTGGTAATCGTTCCTAATTTTACAAGGGAATCCATCATCGATTTCACTCGGTCAAGTTTTCTATCCTTGGGGATATCCTGCTATCGTCAACTTATTGGTACTACATCAACTCTGCCGCCATATTATCTCTGGTTGTTTTGGTTGGAGCGAGCTGTGAGCCTTTACCTCCTAATACTTTACCACAGAGCTAAAAAATTTTGGGGTATAGCTTTTGGCTTCTACTTGATGTCCACCATATGCAGTTCTTCCATTGTATACTTCATGCCTACAAGAAAATGGCAAGGACTTCCGAAAAACCCTAGCCCTAGGAAAACTAACAAGGGAGAGGTTTTGGTTAAAAAGGTTGATATATTAGAAAGACTGATGTTCTGGCTGGAGCGGCTCGTGGTCGTAGTATGCATCTTTTTTATATCCAGATTTGTTCGATTCTCTACTGTATTCTTCTGTTTTTCTGATTTCATCTACTTGATCTGCTTTGCTCTGCGGTTAGAGGTCAATCCTTTGCCAGAAGTTGAAAAGGGTTTAAAAGCAGAGAAAAAGAAAGCCAAAATTGAGGATGAGCCACAAATAGGGAAGTTTGAAGTTCACCAAGGAGATCATAACAATTGGGAAAAGGAATTGAGTCCACATGTACCAAAATTGAGGATGAGTCGCCAAAACAAAAGTTGGAAGGTTCATCACCAAGATGAAAATAACAGTTGGGAAAAGGAATTGGTGGCAAAATATGGGTGTATGGAACATATGTCAGAATTCAAATGTACCAAACCTAAGGACACTGCCAAGTATGAAAATGAAGAAGAACCATCAAAAGATGAAAGATACAATTGGGAAGAGGAATTGGATGGGTTTATGGAGGAGCATGTATCGGGATTCACGTACACCAAACCTAAGGAGACTAAGAAATCTGAAATTGAAGAAGAGGCACCAATAGAAGAGAATTACAGATGGCCAAGGGAAGAGGCCGGATTTGGAAGTTGTAGAAGCACTGAAAGAAGAAAACAACAAATCATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

43.27

Weight (kDa)

8.6

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 34, 1009
AccBSI CCGCTC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 342
AciI CCGC 3 cut(s) 203, 466, 571
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 1034
AcsI RAATTY 2 cut(s) 281, 836
AfaI GTAC 5 cut(s) 36, 187, 720, 847, 965
AfiI CCNNNNNNNGG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 4 cut(s) 602, 668, 841, 1001
AluBI AGCT 3 cut(s) 239, 275, 296
AluI AGCT 3 cut(s) 239, 275, 296
Alw26I GTCTC 1 cut(s) 974
AlwI GGATC 1 cut(s) 64
AoxI GGCC 3 cut(s) 12, 1034, 1047
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 281, 836
Asp718I GGTACC 1 cut(s) 34
AspA2I CCTAGG 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 665, 758
AvrII CCTAGG 1 cut(s) 392
AxyI CCTNAGG 2 cut(s) 855, 975
BalI TGGCCA 1 cut(s) 1036
BanI GGYRCC 2 cut(s) 34, 1009
BauI CACGAG 1 cut(s) 470
BbvI GCAGC 1 cut(s) 17
BccI CCATC 5 cut(s) 25, 128, 898, 923, 1026
BcoDI GTCTC 1 cut(s) 974
BfaI CTAG 2 cut(s) 387, 393
BisI GCNGC 3 cut(s) 6, 203, 467
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 3 cut(s) 7, 204, 468
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 15, 36, 1011
BmsI GCATC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 963
BsaBI GATNNNNATC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 153, 392, 676, 1037
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse21I CCTNAGG 2 cut(s) 855, 975
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 4 cut(s) 153, 392, 676, 1037
BseGI GGATG 4 cut(s) 36, 649, 738, 934
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 44, 956
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 14, 1036, 1049
BshNI GGYRCC 2 cut(s) 34, 1009
BshVI ATCGAT 1 cut(s) 126
BsiSI CCGG 1 cut(s) 1050
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 974
BsnI GGCC 3 cut(s) 14, 1036, 1049
Bsp143I GATC 3 cut(s) 69, 555, 682
BspACI CCGC 3 cut(s) 203, 466, 571
BspANI GGCC 3 cut(s) 14, 1036, 1049
BspCNI CTCAG 1 cut(s) 36
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 15, 36, 1011
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 2 cut(s) 34, 1009
BsrBI CCGCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 4 cut(s) 153, 392, 676, 1037
BssMI GATC 3 cut(s) 69, 555, 682
BssNAI GTATAC 1 cut(s) 343
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 4 cut(s) 153, 392, 676, 1037
Bst1107I GTATAC 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 523, 785
Bst6I CTCTTC 4 cut(s) 912, 999, 1014, 1038
BstBAI YACGTR 1 cut(s) 963
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 23, 855, 975, 984
BstF5I GGATG 4 cut(s) 36, 649, 738, 934
BstKTI GATC 3 cut(s) 72, 558, 685
BstMAI GTCTC 1 cut(s) 974
BstMBI GATC 3 cut(s) 69, 555, 682
BstMWI GCNNNNNNNGC 2 cut(s) 11, 466
BstNSI RCATGY 2 cut(s) 719, 950
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BstZ17I GTATAC 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 126
Bsu36I CCTNAGG 2 cut(s) 855, 975
BsuRI GGCC 3 cut(s) 14, 1036, 1049
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 4 cut(s) 36, 649, 738, 934
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 861, 1071
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 5 cut(s) 35, 186, 719, 846, 964
CviAII CATG 3 cut(s) 349, 716, 947
CviQI GTAC 5 cut(s) 35, 186, 719, 846, 964
DdeI CTNAG 4 cut(s) 23, 855, 975, 984
DpnI GATC 3 cut(s) 71, 557, 684
DpnII GATC 3 cut(s) 69, 555, 682
DraI TTTAAA 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 1034
Eam1104I CTCTTC 4 cut(s) 912, 999, 1014, 1038
EarI CTCTTC 4 cut(s) 912, 999, 1014, 1038
Eco130I CCWWGG 4 cut(s) 153, 392, 676, 1037
Eco32I GATATC 1 cut(s) 162
Eco81I CCTNAGG 2 cut(s) 855, 975
EcoRI GAATTC 1 cut(s) 836
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 4 cut(s) 153, 392, 676, 1037
EcoT22I ATGCAT 1 cut(s) 488
ErhI CCWWGG 4 cut(s) 153, 392, 676, 1037
FaeI CATG 3 cut(s) 352, 719, 950
FatI CATG 3 cut(s) 348, 715, 946
FauNDI CATATG 2 cut(s) 323, 828
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 6, 203, 467
FokI GGATG 4 cut(s) 43, 656, 745, 941
Fsp4HI GCNGC 3 cut(s) 6, 203, 467
FspBI CTAG 2 cut(s) 387, 393
GluI GCNGC 3 cut(s) 6, 203, 467
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 3 cut(s) 14, 1036, 1049
HapII CCGG 1 cut(s) 1050
Hin1II CATG 3 cut(s) 352, 719, 950
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 5 cut(s) 116, 513, 709, 736, 957
HpaII CCGG 1 cut(s) 1050
HphI GGTGA 2 cut(s) 665, 758
Hpy166II GTNNAC 6 cut(s) 176, 318, 343, 673, 713, 966
Hpy188I TCNGA 5 cut(s) 26, 378, 541, 835, 994
Hpy188III TCNNGA 2 cut(s) 501, 954
Hpy8I GTNNAC 6 cut(s) 176, 318, 343, 673, 713, 966
HpyAV CCTTC 1 cut(s) 751
HpyCH4III ACNGT 2 cut(s) 523, 785
HpyCH4IV ACGT 1 cut(s) 962
HpyCH4V TGCA 3 cut(s) 77, 327, 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 466
HpyF3I CTNAG 4 cut(s) 23, 855, 975, 984
HpySE526I ACGT 1 cut(s) 962
Hsp92II CATG 3 cut(s) 352, 719, 950
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 69, 555, 682
LmnI GCTCC 3 cut(s) 232, 463, 943
LpnPI CCDG 8 cut(s) 74, 178, 202, 442, 446, 514, 606, 1063
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 495
MaeI CTAG 2 cut(s) 387, 393
MaeII ACGT 1 cut(s) 962
MalI GATC 3 cut(s) 71, 557, 684
MbiI CCGCTC 1 cut(s) 466
MboI GATC 3 cut(s) 69, 555, 682
MfeI CAATTG 2 cut(s) 691, 910
MflI RGATCY 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 1036
MluNI TGGCCA 1 cut(s) 1036
MlyI GAGTC 2 cut(s) 718, 745
MmeI TCCRAC 2 cut(s) 210, 734
Mox20I TGGCCA 1 cut(s) 1036
Mph1103I ATGCAT 1 cut(s) 488
MscI TGGCCA 1 cut(s) 1036
MseI TTAA 2 cut(s) 423, 611
MslI CAYNNNNRTG 1 cut(s) 771
Msp20I TGGCCA 1 cut(s) 1036
MspI CCGG 1 cut(s) 1050
MunI CAATTG 2 cut(s) 691, 910
MwoI GCNNNNNNNGC 2 cut(s) 11, 466
NdeI CATATG 2 cut(s) 323, 828
NdeII GATC 3 cut(s) 69, 555, 682
NlaIII CATG 3 cut(s) 352, 719, 950
NlaIV GGNNCC 3 cut(s) 15, 36, 1011
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 2 cut(s) 719, 950
PciI ACATGT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 959
PfeI GAWTC 3 cut(s) 116, 513, 957
PkrI GCNGC 3 cut(s) 7, 204, 468
PleI GAGTC 2 cut(s) 717, 744
PpsI GAGTC 2 cut(s) 717, 744
Ppu21I YACGTR 1 cut(s) 963
PscI ACATGT 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 15, 36, 1011
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 5 cut(s) 36, 187, 720, 847, 965
RsaNI GTAC 5 cut(s) 35, 186, 719, 846, 964
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 2 cut(s) 423, 611
SatI GCNGC 3 cut(s) 6, 203, 467
Sau3AI GATC 3 cut(s) 69, 555, 682
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 718, 745
SfaNI GCATC 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 771
SsiI CCGC 3 cut(s) 203, 466, 571
SspMI CTAG 2 cut(s) 387, 393
StyI CCWWGG 4 cut(s) 153, 392, 676, 1037
TaaI ACNGT 2 cut(s) 523, 785
TaiI ACGT 1 cut(s) 965
TaqI TCGA 2 cut(s) 126, 511
TaqII GACCGA 1 cut(s) 126
TauI GCSGC 2 cut(s) 205, 469
TfiI GAWTC 3 cut(s) 116, 513, 957
Tru1I TTAA 2 cut(s) 423, 611
Tru9I TTAA 2 cut(s) 423, 611
TscAI CASTG 2 cut(s) 868, 1078
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 7 cut(s) 337, 535, 752, 789, 888, 894, 915
TspRI CASTG 2 cut(s) 868, 1078
XapI RAATTY 2 cut(s) 281, 836
XceI RCATGY 2 cut(s) 719, 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 387, 393
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.