Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

11146261 .. 11146590

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGCACTGTGCCATGGATTGTCAACTCAGAGATCTATCCTTTAACGTATCGCGGCGTGTGTAGAGGAATAGCAGCTACAGCCAACTGGATTTCAAACCTCATTGTTGCACAGTCCTTCCTATCTCTGACTCAGGCAATTGGAACTTCTTGGACATTTCTGATATTCGGGATCATTTCCTCTGCAGCCTTGATCTTTGTCCTAATTTTCGTCCCAGAAACCGAGAGGCTTCCAATTGAAGAGGTTGAGAAGATGCTGGAGCTGAGGGCTCTGCACTTCAAGTTCTGGGAAAAAAGGCCCAAGTCTCTAGAAAAGAGCCGAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

110

Amino Acids

12.37

Weight (kDa)

8.93

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 85	4.9e-20	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	96, 239, 280
AluBI	AGCT	3 cut(s)	77, 262, 323
AluI	AGCT	3 cut(s)	77, 262, 323
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	74, 185
AspS9I	GGNCC	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	86, 197
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	2 cut(s)	78, 183
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	3 cut(s)	55, 75, 186
BlsI	GCNGC	3 cut(s)	56, 76, 187
BmgT120I	GGNCC	1 cut(s)	297
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	42, 146, 254
BseNI	ACTGG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	86, 197
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	8, 271
Bsp143I	GATC	3 cut(s)	33, 171, 192
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	3 cut(s)	41, 145, 255
BspFNI	CGCG	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	3 cut(s)	33, 171, 192
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	10, 114
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	28, 132, 263
BstDSI	CCRYGG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	36, 174, 195
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	33, 171, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSFI	CTRYAG	2 cut(s)	78, 183
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	86, 197
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	297
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	9 cut(s)	77, 83, 188, 229, 262, 269, 298, 318, 323
CviKI_1	RGCY	9 cut(s)	77, 83, 188, 229, 262, 269, 298, 318, 323
DdeI	CTNAG	3 cut(s)	28, 132, 263
DpnI	GATC	3 cut(s)	35, 173, 194
DpnII	GATC	3 cut(s)	33, 171, 192
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	18
FaiI	YATR	1 cut(s)	16
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	55, 75, 186
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	55, 75, 186
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	55, 75, 186
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	31, 129, 162
Hpy188III	TCNNGA	2 cut(s)	169, 308
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	10, 114
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	110, 185, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	28, 132, 263
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	33, 171, 192
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	73, 119, 228, 242, 271
Lsp1109I	GCAGC	2 cut(s)	86, 197
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	47
MalI	GATC	3 cut(s)	35, 173, 194
MboI	GATC	3 cut(s)	33, 171, 192
MboII	GAAGA	2 cut(s)	251, 262
MfeI	CAATTG	2 cut(s)	138, 234
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	8, 271
MluCI	AATT	3 cut(s)	138, 204, 234
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	59, 110, 190, 219, 235, 258
MseI	TTAA	1 cut(s)	44
MunI	CAATTG	2 cut(s)	138, 234
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	3 cut(s)	33, 171, 192
NlaIII	CATG	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	56, 76, 187
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	3 cut(s)	55, 75, 186
Sau3AI	GATC	3 cut(s)	33, 171, 192
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	124
SduI	GDGCHC	2 cut(s)	8, 271
SetI	ASST	6 cut(s)	50, 79, 102, 246, 264, 325
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	78, 183
Sse9I	AATT	3 cut(s)	138, 204, 234
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	10, 114
TaiI	ACGT	1 cut(s)	50
TasI	AATT	3 cut(s)	138, 204, 234
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	74, 185
TspRI	CASTG	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.