Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

9757353 .. 9758202

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAAAGGCTGAGGAAGGAGATGTTGGTGATGGCATCATAGCAAAACTAATGGGCGCATTCAGCAACCCTGTGGTTCGAAGAGGACTCTATGCAGGCATAACAGTCCAAGTGGCAGCTCACGCTCCTCGTATTAGTAATTTGGAATCAACTCATTTTGGTAGTACCTCTACATGTCCGGCTTATGTGTCTGCCCCAAATCTAGCCTCATGGAACTGCATGACATGTTTGAAAGCTCAGTGTGGCTTCTGTGCTAGTAGTGTCATGGCTTATGCCCCAGGAGCTTGCGTGGCTTCGAATGAGAGCTTGAAAAAGGCATGTGGCGGAGAACATCGTGTATGGTACACAAAAGGGTGTCCAAGCAAAGTTGGATTCCTTGCAGTAATCCTTTTAGGATTGTACATCATTATCTACGCACCTGGGATGGGAACCGTCCCGTGGATTGTGAACTCAGAGATATACCCTTTGAGATACAGAGGCACATGTGGAGGGATTGCTGCAGTGGCTAATTGGAGTGCCAATCTGATTGTGAGTGAGACATTTTTAACCCTCACTCATGCTTTGAGTTCTGCGGGCACTTTCCTCATCTTTGTTGTTCTCTCATTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

203

Amino Acids

21.38

Weight (kDa)

8.07

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	120 - 201	3.7e-17	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	324, 572
AfaI	GTAC	3 cut(s)	166, 344, 401
AfiI	CCNNNNNNNGG	2 cut(s)	425, 438
AflIII	ACRYGT	3 cut(s)	173, 224, 482
AgsI	TTSAA	2 cut(s)	232, 310
AjnI	CCWGG	2 cut(s)	277, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	4 cut(s)	119, 236, 284, 306
AluI	AGCT	4 cut(s)	119, 236, 284, 306
Alw26I	GTCTC	1 cut(s)	530
ApeKI	GCWGC	2 cut(s)	116, 497
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	41
AsuII	TTCGAA	2 cut(s)	79, 296
BaeGI	GKGCMC	1 cut(s)	578
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	128, 484
BccI	CCATC	2 cut(s)	26, 418
BciT130I	CCWGG	2 cut(s)	279, 420
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	203, 255, 610
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	2 cut(s)	117, 498
BlsI	GCNGC	2 cut(s)	118, 499
Bme1390I	CCNGG	2 cut(s)	279, 420
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	279, 420
BmsI	GCATC	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	79, 296
BsaJI	CCNNGG	3 cut(s)	277, 419, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 438
BseBI	CCWGG	2 cut(s)	279, 420
BseDI	CCNNGG	3 cut(s)	277, 419, 437
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	425, 438
BseMII	CTCAG	2 cut(s)	251, 465
BseRI	GAGGAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	128, 484
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	425, 438
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	59
Bsp119I	TTCGAA	2 cut(s)	79, 296
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	399
BspACI	CCGC	2 cut(s)	324, 572
BspCNI	CTCAG	3 cut(s)	4, 250, 464
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	502
BspT104I	TTCGAA	2 cut(s)	79, 296
BsrGI	TGTACA	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	277, 419, 437
Bst2UI	CCWGG	2 cut(s)	279, 420
Bst4CI	ACNGT	2 cut(s)	106, 433
Bst6I	CTCTTC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	399
BstBI	TTCGAA	2 cut(s)	79, 296
BstC8I	GCNNGC	3 cut(s)	97, 286, 574
BstDEI	CTNAG	3 cut(s)	12, 237, 451
BstDSI	CCRYGG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 122, 281, 290, 503
BstNI	CCWGG	2 cut(s)	279, 420
BstNSI	RCATGY	4 cut(s)	177, 228, 321, 486
BstSCI	CCNGG	2 cut(s)	277, 418
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	128, 484
BtgI	CCRYGG	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	245, 507
Cac8I	GCNNGC	3 cut(s)	97, 286, 574
CfoI	GCGC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	165, 343, 400
CviAII	CATG	8 cut(s)	174, 210, 220, 225, 265, 318, 483, 557
CviQI	GTAC	3 cut(s)	165, 343, 400
DdeI	CTNAG	3 cut(s)	12, 237, 451
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	277, 418
FaeI	CATG	8 cut(s)	177, 213, 223, 228, 268, 321, 486, 560
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	8 cut(s)	173, 209, 219, 224, 264, 317, 482, 556
FauI	CCCGC	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	117, 498
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	117, 498
FspBI	CTAG	3 cut(s)	203, 255, 610
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	117, 498
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	8 cut(s)	177, 213, 223, 228, 268, 321, 486, 560
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	87, 146, 372
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	345, 448
Hpy188I	TCNGA	2 cut(s)	454, 525
Hpy8I	GTNNAC	2 cut(s)	345, 448
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	2 cut(s)	106, 433
HpyCH4V	TGCA	4 cut(s)	95, 219, 380, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 122, 281, 290, 503
HpyF3I	CTNAG	3 cut(s)	12, 237, 451
Hsp92II	CATG	8 cut(s)	177, 213, 223, 228, 268, 321, 486, 560
HspAI	GCGC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	130, 281
LpnPI	CCDG	7 cut(s)	81, 84, 192, 264, 291, 405, 432
Lsp1109I	GCAGC	2 cut(s)	128, 484
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	3 cut(s)	203, 255, 610
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	2 cut(s)	139, 508
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	9 cut(s)	7, 77, 138, 178, 217, 470, 482, 560, 593
MseI	TTAA	1 cut(s)	545
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	279, 420
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	279, 420
MwoI	GCNNNNNNNGC	5 cut(s)	63, 122, 281, 290, 503
NlaIII	CATG	8 cut(s)	177, 213, 223, 228, 268, 321, 486, 560
NlaIV	GGNNCC	1 cut(s)	430
NspI	RCATGY	4 cut(s)	177, 228, 321, 486
NspV	TTCGAA	2 cut(s)	79, 296
PciI	ACATGT	3 cut(s)	173, 224, 482
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	146, 372
PkrI	GCNGC	2 cut(s)	118, 499
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PscI	ACATGT	3 cut(s)	173, 224, 482
Psp6I	CCWGG	2 cut(s)	277, 418
PspGI	CCWGG	2 cut(s)	277, 418
PspN4I	GGNNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	502
RsaI	GTAC	3 cut(s)	166, 344, 401
RsaNI	GTAC	3 cut(s)	165, 343, 400
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	2 cut(s)	117, 498
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	279, 420
SduI	GDGCHC	1 cut(s)	578
SetI	ASST	6 cut(s)	121, 170, 238, 286, 308, 421
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	498
SfuI	TTCGAA	2 cut(s)	79, 296
Sse9I	AATT	2 cut(s)	139, 508
SsiI	CCGC	2 cut(s)	324, 572
SspMI	CTAG	3 cut(s)	203, 255, 610
StyD4I	CCNGG	2 cut(s)	277, 418
TaaI	ACNGT	2 cut(s)	106, 433
TaqI	TCGA	2 cut(s)	79, 296
TasI	AATT	2 cut(s)	139, 508
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	146, 372
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	245, 507
TseI	GCWGC	2 cut(s)	116, 497
TspRI	CASTG	2 cut(s)	245, 507
XceI	RCATGY	4 cut(s)	177, 228, 321, 486
XspI	CTAG	3 cut(s)	203, 255, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.