Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

10372692 .. 10373054

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG110600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGCGCTGTGCCATGGATTGTCAACTCAGAGATCTATCCTTTAAGGTATTGCGGCGTGTGTGGAGGAATAGCAGCTACAGCCAACTGGATTTCAAACCTCATTGTTGCACAGTCCTTCCTATCTCTGACTCAGGCAATTGGAACTTCTTGGACATTCCTGATATTCGGGATCATTTCCTTTGCAGCCTTGATTTTTGTCCTCATTTTCGTCCCAGAAACCAAGGGGCTTCCAATTGAAGAGGTTGAGAAGATGCTGGAGCTGAGGGCTCTGCACTTCAAGTTCTGGGAAAAAAAGGCCCAAGACTCTAGAAAAGAGCCAAGCTGTGTGAAAAATTGTTTGAAGTTTATGGCCGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

120

Amino Acids

13.39

Weight (kDa)

8.4

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 85	1.5e-19	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	351
AgsI	TTSAA	4 cut(s)	96, 239, 280, 343
AluBI	AGCT	3 cut(s)	77, 262, 324
AluI	AGCT	3 cut(s)	77, 262, 324
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	297, 351
ApeKI	GCWGC	2 cut(s)	74, 185
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	86, 197
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	9
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	3 cut(s)	55, 75, 186
BlsI	GCNGC	3 cut(s)	56, 76, 187
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	14, 222
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	14, 222
BseMII	CTCAG	3 cut(s)	42, 146, 254
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	86, 197
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	299, 353
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	299, 353
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	33, 171
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	299, 353
BspCNI	CTCAG	3 cut(s)	41, 145, 255
BspPI	GGATC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	14, 222
BssMI	GATC	2 cut(s)	33, 171
BssT1I	CCWWGG	2 cut(s)	14, 222
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	28, 132, 263
BstDSI	CCRYGG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	36, 174
BstMBI	GATC	2 cut(s)	33, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	86, 197
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	299, 353
BtgI	CCRYGG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	298
CviAII	CATG	1 cut(s)	15
DdeI	CTNAG	3 cut(s)	28, 132, 263
DpnI	GATC	2 cut(s)	35, 173
DpnII	GATC	2 cut(s)	33, 171
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	14, 222
Eco24I	GRGCYC	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	14, 222
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	14, 222
FaeI	CATG	1 cut(s)	18
FaiI	YATR	2 cut(s)	16, 350
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	55, 75, 186
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	55, 75, 186
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	3 cut(s)	55, 75, 186
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	299, 353
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	130, 305
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	31, 129
Hpy188III	TCNNGA	3 cut(s)	160, 169, 309
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	110, 185, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	28, 132, 263
Hsp92II	CATG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	33, 171
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	73, 119, 173, 228, 242, 271
Lsp1109I	GCAGC	2 cut(s)	86, 197
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	309
MalI	GATC	2 cut(s)	35, 173
MboI	GATC	2 cut(s)	33, 171
MboII	GAAGA	2 cut(s)	251, 262
MfeI	CAATTG	2 cut(s)	138, 234
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	138, 234, 334
MlyI	GAGTC	2 cut(s)	124, 299
MnlI	CCTC	5 cut(s)	59, 110, 212, 235, 258
MseI	TTAA	2 cut(s)	44, 361
MspI	CCGG	1 cut(s)	354
MunI	CAATTG	2 cut(s)	138, 234
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	33, 171
NlaIII	CATG	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	56, 76, 187
PleI	GAGTC	2 cut(s)	124, 299
PpsI	GAGTC	2 cut(s)	124, 299
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	44, 361
SatI	GCNGC	3 cut(s)	55, 75, 186
Sau3AI	GATC	2 cut(s)	33, 171
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	124, 299
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	50, 79, 102, 246, 264, 326
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	138, 234, 334
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	14, 222
TaaI	ACNGT	1 cut(s)	114
TasI	AATT	3 cut(s)	138, 234, 334
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	44, 361
Tru9I	TTAA	2 cut(s)	44, 361
TseI	GCWGC	2 cut(s)	74, 185
XbaI	TCTAGA	1 cut(s)	308
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.