Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

409030 .. 411019

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000101.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtttgcgagaagtggttcttctatttacactgctggtgctgaagggatgatttgtgaaatcgattcattgacagcaaaggttagtatagcgaatcttggtattattgctggtgtggctgctctaattttgggatccaagaagttacctgaattgggcaagaggtgcgacccgacggtgacccgacccggacccatctccattttccagccactagcagcggttgacccggcttggactgacgcgcctcagcctccatcgtcgatccctggtgttggtttcactggtggaacacctcagaggaagatcgaaggccctcagttgtacgatcgggacccgaccggtttccgatctcccacgacttccaggccgatttcttcacagttctgggatcgtctcttcctcctgatcatcctcatacttaccttgttggacgattttgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

148

Amino Acids

15.73

Weight (kDa)

6.19

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	4 cut(s)	129, 142, 259, 399
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	155, 275
AgeI	ACCGGT	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	268, 365
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	4 cut(s)	129, 142, 259, 399
AoxI	GGCC	2 cut(s)	313, 368
ApeKI	GCWGC	2 cut(s)	119, 218
AsiGI	ACCGGT	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	191, 314, 334
AsuC2I	CCSGG	2 cut(s)	189, 230
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	191, 334
BamHI	GGATCC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	106, 230
BccI	CCATC	2 cut(s)	203, 265
BciT130I	CCWGG	2 cut(s)	270, 367
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	189, 230
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	120, 219
BlsI	GCNGC	2 cut(s)	121, 220
Bme1390I	CCNGG	4 cut(s)	189, 230, 270, 367
Bme18I	GGWCC	2 cut(s)	191, 334
BmgT120I	GGNCC	3 cut(s)	191, 314, 334
BmiI	GGNNCC	4 cut(s)	136, 193, 335, 336
BmrFI	CCNGG	4 cut(s)	189, 230, 270, 367
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	2 cut(s)	189, 230
Bsa29I	ATCGAT	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 275
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	270, 367
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	54, 411
BseLI	CCNNNNNNNGG	2 cut(s)	155, 275
BseMII	CTCAG	3 cut(s)	263, 311, 332
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	106, 230
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	2 cut(s)	331, 342
BshFI	GGCC	2 cut(s)	315, 370
BshTI	ACCGGT	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	63
BsiEI	CGRYCG	2 cut(s)	331, 342
BsiSI	CCGG	3 cut(s)	189, 230, 342
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	155, 275
BsmAI	GTCTC	1 cut(s)	401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	315, 370
Bsp143I	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	315, 370
BspCNI	CTCAG	3 cut(s)	262, 310, 331
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	4 cut(s)	136, 193, 335, 336
BspPI	GGATC	4 cut(s)	129, 142, 259, 399
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
Bst2UI	CCWGG	2 cut(s)	270, 367
Bst4CI	ACNGT	2 cut(s)	178, 384
Bst6I	CTCTTC	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	249, 297, 318
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	54, 411
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	7 cut(s)	137, 267, 309, 331, 353, 394, 411
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
BstMCI	CGRYCG	2 cut(s)	331, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 165
BstNI	CCWGG	2 cut(s)	270, 367
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	4 cut(s)	187, 228, 268, 365
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	106, 230
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	315, 370
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	54, 411
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 282
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	191, 314, 334
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	325
CspAI	ACCGGT	1 cut(s)	341
CviJI	RGCY	6 cut(s)	119, 211, 233, 253, 315, 370
CviKI_1	RGCY	6 cut(s)	119, 211, 233, 253, 315, 370
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	249, 297, 318
DpnI	GATC	7 cut(s)	136, 266, 308, 330, 352, 393, 410
DpnII	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	191, 334
Eco57I	CTGAAG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	178
EcoO109I	RGGNCCY	2 cut(s)	314, 334
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	268, 365
Esp3I	CGTCTC	1 cut(s)	401
FaiI	YATR	2 cut(s)	89, 419
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	120, 219
FokI	GGATG	2 cut(s)	61, 398
Fsp4HI	GCNGC	2 cut(s)	120, 219
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	120, 219
HaeIII	GGCC	2 cut(s)	315, 370
HapII	CCGG	3 cut(s)	189, 230, 342
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	65, 94
HpaII	CCGG	3 cut(s)	189, 230, 342
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	300, 350
Hpy188III	TCNNGA	2 cut(s)	332, 406
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	178, 265
HpyAV	CCTTC	2 cut(s)	38, 305
HpyCH4III	ACNGT	2 cut(s)	178, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 165
HpyF3I	CTNAG	3 cut(s)	249, 297, 318
HspAI	GCGC	1 cut(s)	245
KflI	GGGWCCC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
Lsp1109I	GCAGC	2 cut(s)	106, 230
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	144, 178
MalI	GATC	7 cut(s)	136, 266, 308, 330, 352, 393, 410
MboI	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
MboII	GAAGA	4 cut(s)	12, 316, 369, 391
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	2 cut(s)	126, 152
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	8 cut(s)	156, 258, 264, 294, 306, 327, 413, 425
MroXI	GAANNNNTTC	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	189, 230, 342
MspR9I	CCNGG	4 cut(s)	189, 230, 270, 367
MvaI	CCWGG	2 cut(s)	270, 367
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	116, 165
NciI	CCSGG	2 cut(s)	189, 230
NdeII	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
NlaIV	GGNNCC	4 cut(s)	136, 193, 335, 336
NmuCI	GTSAC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	65, 94
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	121, 220
Ple19I	CGATCG	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	268, 365
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	2 cut(s)	268, 365
PspN4I	GGNNCC	4 cut(s)	136, 193, 335, 336
PspPI	GGNCC	3 cut(s)	191, 314, 334
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	2 cut(s)	120, 219
Sau3AI	GATC	7 cut(s)	134, 264, 306, 328, 350, 391, 408
Sau96I	GGNCC	3 cut(s)	191, 314, 334
ScrFI	CCNGG	4 cut(s)	189, 230, 270, 367
SetI	ASST	5 cut(s)	84, 151, 167, 298, 428
SinI	GGWCC	2 cut(s)	191, 334
Sse9I	AATT	2 cut(s)	126, 152
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	4 cut(s)	187, 228, 268, 365
TaaI	ACNGT	2 cut(s)	178, 384
TaqI	TCGA	3 cut(s)	63, 263, 309
TasI	AATT	2 cut(s)	126, 152
TfiI	GAWTC	2 cut(s)	65, 94
TscAI	CASTG	2 cut(s)	37, 289
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	119, 218
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	37, 289
VpaK11BI	GGWCC	2 cut(s)	191, 334
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.