Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

29094122 .. 29094715

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTACGGGAGGACAATTCTTGTCAGACCTTATCAATGTCACCTTCACCAAGCTCAAGGAACCTGGCGTTGGATGCTTGGAGTCGCCGGAGTTCCAGCCCTTGTTCAGTTCATATTGATGTTTTCACTTCCAGAGTCTCTAAGATGGCTCTACATAGAGATGCACCGATTCAATAACAGACAACGCCAATCCAATGTTCAAATTCAAAGTCTAACATACGATTTTACGACGGAAAGTGTCGCATATAACTTGGTATTGATGTTGCTTATGTTAAAGAGAACATGTCGTGGAGAACACAGGACATGGTACAGCAAAGGTTGCCCTAGTAAAATTGGAATATTTGCAGTGATACTATTGGGATTGTACATTATAATGTATGCACCCGGAATGGGAACCGTACCATGGATCATGAGCTTGGAGATATACCCGCTGAGATACAGAGGGACTGGCGGAGGAGTCGCTGCAGTTTCAAACTGTCCAATCTCATGGTTAGTGAAACATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

9.81

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AciI	CCGC	2 cut(s)	428, 450
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	4 cut(s)	5, 308, 365, 399
AfiI	CCNNNNNNNGG	3 cut(s)	69, 389, 402
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	172, 200, 206, 471
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	4 cut(s)	52, 84, 180, 212
AluBI	AGCT	2 cut(s)	53, 414
AluI	AGCT	2 cut(s)	53, 414
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	201
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	2 cut(s)	32, 38
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	64, 384
BmiI	GGNNCC	2 cut(s)	61, 394
BmrFI	CCNGG	2 cut(s)	64, 384
BmsI	GCATC	2 cut(s)	63, 150
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 389, 402
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	69, 389, 402
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	87, 384
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	3 cut(s)	69, 389, 402
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	2 cut(s)	428, 450
BspCNI	CTCAG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	61, 394
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	413
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	397, 476
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	140, 431
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 318
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	62, 382
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	4, 307, 364, 398
CviAII	CATG	5 cut(s)	282, 303, 402, 409, 486
CviJI	RGCY	4 cut(s)	53, 98, 148, 414
CviKI_1	RGCY	4 cut(s)	53, 98, 148, 414
CviQI	GTAC	4 cut(s)	4, 307, 364, 398
DdeI	CTNAG	2 cut(s)	140, 431
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	5 cut(s)	285, 306, 405, 412, 489
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	5 cut(s)	281, 302, 401, 408, 485
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	462
HapII	CCGG	2 cut(s)	87, 384
Hin1II	CATG	5 cut(s)	285, 306, 405, 412, 489
HinfI	GANTC	4 cut(s)	81, 134, 168, 456
HpaII	CCGG	2 cut(s)	87, 384
HphI	GGTGA	2 cut(s)	32, 38
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	131, 409
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	397, 476
HpyCH4V	TGCA	4 cut(s)	163, 344, 380, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 318
HpyF3I	CTNAG	2 cut(s)	140, 431
Hsp92II	CATG	5 cut(s)	285, 306, 405, 412, 489
Kzo9I	GATC	1 cut(s)	405
LpnPI	CCDG	8 cut(s)	49, 76, 100, 108, 144, 283, 397, 432
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	2 cut(s)	63, 150
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MluCI	AATT	3 cut(s)	15, 201, 330
MlyI	GAGTC	3 cut(s)	90, 143, 465
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	3, 434, 446
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	3 cut(s)	116, 158, 371
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	2 cut(s)	87, 384
MspR9I	CCNGG	2 cut(s)	64, 384
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	73, 318
NciI	CCSGG	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	5 cut(s)	285, 306, 405, 412, 489
NlaIV	GGNNCC	2 cut(s)	61, 394
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	285
PagI	TCATGA	1 cut(s)	408
PciI	ACATGT	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	3 cut(s)	89, 142, 464
PpsI	GAGTC	3 cut(s)	89, 142, 464
PscI	ACATGT	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	61, 394
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	4 cut(s)	5, 308, 365, 399
RsaNI	GTAC	4 cut(s)	4, 307, 364, 398
RseI	CAYNNNNRTG	3 cut(s)	116, 158, 371
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	1 cut(s)	405
SchI	GAGTC	3 cut(s)	90, 143, 465
ScrFI	CCNGG	2 cut(s)	64, 384
SetI	ASST	6 cut(s)	31, 45, 55, 65, 319, 416
SfaNI	GCATC	2 cut(s)	63, 150
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	3 cut(s)	116, 158, 371
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	15, 201, 330
SsiI	CCGC	2 cut(s)	428, 450
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	62, 382
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	397, 476
TasI	AATT	3 cut(s)	15, 201, 330
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	351
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.