Rh1DG361300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
58814545 .. 58828020
13476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG361300.1

Sequence Viewer

Length: 408 bp
ATGCAAGCATTAAGAATTGGACACGCTGCAATAAGTGTAAAGTGTTTCCCATCGGGAGAGCTTAGAAGAGTTGCTGGATTTCCTCTTGGGAGTACATATGAGGACCATTCTTTTGGAGTTTCCAGTCCTAAGCCTCCACCTTTCGTGGCAACAGAGGAAGTAAAGAAACTTCAAAGAAAGCATGCAAAGATGCCTCTAGGAAGTCCAGGTACATATCGTAACAAGTCCTATACACCAGCATTTATCAATAAGGGCCTCATATCTAAAGCTTACACTCCTAAACTCAGAGAAGCTGTTAAGCGTTTGCAAGCAGAGAAAAAGGAAGCCAAAATTGAGGATGAGCCACAAAAGGAGAAGTTTGAAGTTCACCAAGGAGAAAATAACGATTGGGAAAAGGAATTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.21

Weight (kDa)

9.52

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 94, 211
AgsI TTSAA 2 cut(s) 173, 362
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 61, 269, 293
AluI AGCT 3 cut(s) 61, 269, 293
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 2 cut(s) 103, 253
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 103
BarI GAAGNNNNNNTAC 4 cut(s) 153, 185, 193, 225
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 253
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 255
BsnI GGCC 1 cut(s) 255
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 3 cut(s) 6, 183, 309
BstDEI CTNAG 3 cut(s) 62, 129, 284
BstF5I GGATG 1 cut(s) 343
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 6, 183, 309
Cfr13I GGNCC 2 cut(s) 103, 253
Csp6I GTAC 2 cut(s) 93, 210
CviAII CATG 1 cut(s) 182
CviJI RGCY 7 cut(s) 61, 133, 255, 269, 293, 326, 343
CviKI_1 RGCY 7 cut(s) 61, 133, 255, 269, 293, 326, 343
CviQI GTAC 2 cut(s) 93, 210
DdeI CTNAG 3 cut(s) 62, 129, 284
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 1 cut(s) 185
FaiI YATR 6 cut(s) 97, 99, 183, 214, 231, 260
FatI CATG 1 cut(s) 181
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 267
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 4, 29, 185, 307
HpyF3I CTNAG 3 cut(s) 62, 129, 284
Hsp92II CATG 1 cut(s) 185
LpnPI CCDG 5 cut(s) 60, 136, 192, 219, 249
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 1 cut(s) 78
MluCI AATT 3 cut(s) 15, 330, 398
MnlI CCTC 7 cut(s) 93, 94, 144, 148, 204, 266, 328
MseI TTAA 2 cut(s) 11, 297
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 97
NlaIII CATG 1 cut(s) 185
NspI RCATGY 1 cut(s) 185
PaeI GCATGC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 2 cut(s) 103, 253
RsaI GTAC 2 cut(s) 94, 211
RsaNI GTAC 2 cut(s) 93, 210
SaqAI TTAA 2 cut(s) 11, 297
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 2 cut(s) 103, 253
ScrFI CCNGG 1 cut(s) 207
SetI ASST 5 cut(s) 63, 142, 211, 271, 295
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 103
SphI GCATGC 1 cut(s) 185
Sse9I AATT 3 cut(s) 15, 330, 398
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 370
TasI AATT 3 cut(s) 15, 330, 398
TatI WGTACW 1 cut(s) 92
Tru1I TTAA 2 cut(s) 11, 297
Tru9I TTAA 2 cut(s) 11, 297
TseI GCWGC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 185
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.