RchiOBHm_Chr6g0251681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000977
Physical Location & Seq
Forward (+)
6939324 .. 6939601
278 bp
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UTR
Exon/CDS
Intron
PRQ22563

Sequence Viewer

Length: 210 bp
ATGGCAGCAATGGCCCCCAAACTCAGAGGGATGGTACCCAAAACAGATAATCTCCTCCTAAAGATTGAGATCCTTGCAATTCTTCTTCTGGTAATCGTTCCTAATTTTACAAGGGAATCCATCATCGATTTCACTCGGTCAAGTTTTCTATCCTTAGGGATATCCTGCTATCGTCAACTTATTGGTACTACATCAACTGTAAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.58

Weight (kDa)

9.62

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 34
AclWI GGATC 1 cut(s) 64
AfaI GTAC 3 cut(s) 36, 187, 205
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 5
Asp718I GGTACC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 154
BanI GGYRCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 25, 128
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 15, 36
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 68
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 126
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 69
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 36
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 15, 36
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 15
BssMI GATC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 23, 154
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 14
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 3 cut(s) 35, 186, 204
CviJI RGCY 1 cut(s) 14
CviKI_1 RGCY 1 cut(s) 14
CviQI GTAC 3 cut(s) 35, 186, 204
DdeI CTNAG 2 cut(s) 23, 154
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco32I GATATC 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 23, 154
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 2 cut(s) 74, 178
Lsp1109I GCAGC 1 cut(s) 17
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 74, 77
MflI RGATCY 1 cut(s) 69
MluCI AATT 2 cut(s) 78, 103
MnlI CCTC 2 cut(s) 20, 65
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 69
NlaIV GGNNCC 2 cut(s) 15, 36
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 15, 36
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 36, 187, 205
RsaNI GTAC 3 cut(s) 35, 186, 204
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 13
ScaI AGTACT 1 cut(s) 205
SgeI CNNG 6 cut(s) 86, 101, 123, 147, 153, 177
Sse9I AATT 2 cut(s) 78, 103
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 126
TaqII GACCGA 1 cut(s) 126
TasI AATT 2 cut(s) 78, 103
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 1 cut(s) 116
TseI GCWGC 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.