Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8207036.1

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 557

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8207036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 298 bp

atgaaatggttcacttctgaaagaaagaagaaaaggaagcttgggtgctcgttgttggttttgggaactggtggtggtgatgtattggctcttgatgtggctgctggtcaatcgaaatggagagttaccgattgccatgcaggtcgtgttagtgcaatatcgtttgcaagaagtggttcttctatttacactgccggtgctgatgggatgatttgcgaaatcgattcacttacaggaaacctgttggggaagttcaaagcttcgacaaaggcaatctcctctatgtctgtttcagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

99

Amino Acids

10.32

Weight (kDa)

9.72

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	2 cut(s)	40, 260
AluI	AGCT	2 cut(s)	40, 260
Alw21I	GWGCWC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	101
Asp700I	GAANNNNTTC	2 cut(s)	8, 175
AsuHPI	GGTGA	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	50
BspDI	ATCGAT	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	222
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	40, 89, 101, 260
CviKI_1	RGCY	4 cut(s)	40, 89, 101, 260
FaeI	CATG	1 cut(s)	140
FaiI	YATR	2 cut(s)	138, 284
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	38, 258
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	140, 155, 167
Hsp92II	CATG	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	54, 90, 126, 208, 219, 254
Lsp1109I	GCAGC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	40, 171
MhlI	GDGCHC	1 cut(s)	50
MnlI	CCTC	1 cut(s)	289
MroXI	GAANNNNTTC	2 cut(s)	8, 175
MspI	CCGG	1 cut(s)	195
NlaIII	CATG	1 cut(s)	140
PdmI	GAANNNNTTC	2 cut(s)	8, 175
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	42, 145, 243, 262
TaqI	TCGA	3 cut(s)	113, 222, 263
TfiI	GAWTC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	8, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.