Prupe.5G180000_v2.0.a1

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
15125585 .. 15129094
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G180000.2

Sequence Viewer

Length: 1080 bp
ATGGCGGCTCCTGCTGCCCCCCCGTCTGGGCCTTCCACCAGGAAACACGGCTATAGCCGTAAGCAGAAGTCTCTCGGCCTCTTGTGCTCCAACTTCCTCGGCTTGTACAATCGCGACGGCGTTACATCCATTGGCCTCGACGACGCCGCTTCACGATTAGGTGTTGAGAGGCGACGGATCTATGACATCGTCAATGTCTTGGAGAGCGTTGGGGTTCTTGCACGGAAGGCAAAGAACCAATATTCTTGGAAAGGATTTGGGGCAATCCCTAACGCGTTACAAGAGCTCAGGGAAGAGGGTCTAAGAGAGAATTGCATTAACTTTGCTGGCAACGACGATGCAAAGGTTTCAGATGATGAGGATGATGAAGAGAGATGTGGGAGTCAGCTGAACGACAAGTCCAACCCTACTGTCAATCCTCAACCTCCAGCAGACCAAAAACCAGATAATAGAAGGGAAAAGTCTCTGGCGCTTCTTACGCAGAATTTCGTGAAGCTCTTTGTCTGCTCCGCTGAAGAAATGATCTCCCTTGATGATGTTGCCAAGTTATTGCTTGGGGATGCACAGAGTGCATCAGCAATGAGAACAGCTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTTGTCCTCCATGAATCTCATTGAGAAGACCCACACACCAGATACAAGGAAACCTGCATTTAAGTGGTTGGGATTGAGAGGTAAAGAGGAGAATTTGGTTCCAAACGAGTCTAGAAAAAGAGCATTTGGTACAGATATCACAAACGTCATTTCTAAGAGGGGCAAGCTGGAATCTTCTATTGGTGGGGAGTTGGATGCACAAAAACAAAGGCAACATGATTTGGAGGACTCAAAAGATGGTTCAAAGAGCTATCAGTTTGGTCCTTTTGCTCCTGTCACTATTGCCAAACCCGGGAACAGCAACATGAGGAGGGTTCATGACTGGGAGAAGTTGACCTCTACATATCGTCCTCAGTATCAAAACCAAGCTTTGAAGGATCTGTTTTCTCATTATATGGAAGCATGGAAGTCATGGTACTCTGAAGTTGCTGGGAAGAATCCAATCCGAATTTCTTGA

Protein Analysis

360

Amino Acids

40.12

Weight (kDa)

9.05

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 685
AccII CGCG 2 cut(s) 114, 275
AciI CCGC 4 cut(s) 5, 147, 510, 601
AclWI GGATC 2 cut(s) 185, 1008
AcsI RAATTY 3 cut(s) 484, 715, 1071
AcuI CTGAAG 2 cut(s) 534, 1065
AcyI GRCGYC 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 3 cut(s) 107, 754, 1040
AfiI CCNNNNNNNGG 3 cut(s) 26, 27, 915
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 867, 997
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 3 cut(s) 786, 818, 1057
AloI GAACNNNNNNTCC 2 cut(s) 383, 415
AluBI AGCT 7 cut(s) 286, 388, 496, 590, 790, 873, 992
AluI AGCT 7 cut(s) 286, 388, 496, 590, 790, 873, 992
Alw21I GWGCWC 2 cut(s) 89, 288
Alw26I GTCTC 2 cut(s) 75, 468
AlwI GGATC 2 cut(s) 185, 1008
Ama87I CYCGRG 1 cut(s) 914
AoxI GGCC 3 cut(s) 29, 76, 133
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 3 cut(s) 484, 715, 1071
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 29, 884
AsuC2I CCSGG 2 cut(s) 915, 916
AvaI CYCGRG 1 cut(s) 914
AvaII GGWCC 1 cut(s) 884
BanII GRGCYC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 1022, 1054
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 89, 288
BccI CCATC 1 cut(s) 854
BceAI ACGGC 3 cut(s) 42, 64, 133
BciT130I CCWGG 1 cut(s) 40
BcnI CCSGG 2 cut(s) 915, 916
BcoDI GTCTC 2 cut(s) 75, 468
BfaI CTAG 1 cut(s) 735
BfmI CTRYAG 1 cut(s) 52
BfoI RGCGCY 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 685
BisI GCNGC 3 cut(s) 6, 15, 147
BlsI GCNGC 3 cut(s) 7, 16, 148
Bme1390I CCNGG 3 cut(s) 40, 915, 916
Bme18I GGWCC 1 cut(s) 884
BmeT110I CYCGRG 1 cut(s) 914
BmgT120I GGNCC 2 cut(s) 29, 884
BmiI GGNNCC 2 cut(s) 9, 723
BmrFI CCNGG 3 cut(s) 40, 915, 916
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 4 cut(s) 328, 550, 581, 808
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 915, 916
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 97, 914
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 27, 915
Bse1I ACTGG 1 cut(s) 950
Bse3DI GCAATG 1 cut(s) 585
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 97, 914
BseGI GGATG 4 cut(s) 125, 367, 565, 823
BseLI CCNNNNNNNGG 3 cut(s) 26, 27, 915
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 2 cut(s) 301, 989
BseNI ACTGG 1 cut(s) 950
BseRI GAGGAG 2 cut(s) 725, 946
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 2 cut(s) 114, 275
BshFI GGCC 3 cut(s) 31, 78, 135
BsiHKAI GWGCWC 2 cut(s) 89, 288
BsiHKCI CYCGRG 1 cut(s) 914
BsiSI CCGG 1 cut(s) 915
BslI CCNNNNNNNGG 3 cut(s) 26, 27, 915
BsmAI GTCTC 2 cut(s) 75, 468
BsnI GGCC 3 cut(s) 31, 78, 135
BsoBI CYCGRG 1 cut(s) 914
Bsp1286I GDGCHC 2 cut(s) 89, 288
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 3 cut(s) 177, 522, 1000
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 4 cut(s) 5, 147, 510, 601
BspANI GGCC 3 cut(s) 31, 78, 135
BspCNI CTCAG 2 cut(s) 300, 988
BspFNI CGCG 2 cut(s) 114, 275
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 2 cut(s) 9, 723
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 2 cut(s) 185, 1008
BsrDI GCAATG 1 cut(s) 585
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 950
BssECI CCNNGG 2 cut(s) 97, 914
BssMI GATC 3 cut(s) 177, 522, 1000
BssNI GRCGYC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 288, 363
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 328, 788
BstDEI CTNAG 4 cut(s) 287, 302, 777, 975
BstF5I GGATG 4 cut(s) 125, 367, 565, 823
BstFNI CGCG 2 cut(s) 114, 275
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 180, 525, 1003
BstMAI GTCTC 2 cut(s) 75, 468
BstMBI GATC 3 cut(s) 177, 522, 1000
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 84, 227, 478, 569
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 3 cut(s) 38, 913, 914
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 2 cut(s) 114, 275
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 177, 1000
BstYI RGATCY 2 cut(s) 177, 1000
BsuRI GGCC 3 cut(s) 31, 78, 135
BtsCI GGATG 4 cut(s) 125, 367, 565, 823
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 2 cut(s) 328, 788
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 29, 884
Cfr9I CCCGGG 1 cut(s) 914
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 106, 753, 1039
CviAII CATG 6 cut(s) 634, 839, 928, 941, 1026, 1035
CviQI GTAC 3 cut(s) 106, 753, 1039
DdeI CTNAG 4 cut(s) 287, 302, 777, 975
DpnI GATC 3 cut(s) 179, 524, 1002
DpnII GATC 3 cut(s) 177, 522, 1000
DraIII CACNNNGTG 1 cut(s) 569
Eam1104I CTCTTC 2 cut(s) 288, 363
EarI CTCTTC 2 cut(s) 288, 363
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 884
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 534, 1065
Eco88I CYCGRG 1 cut(s) 914
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 6 cut(s) 637, 842, 931, 944, 1029, 1038
FatI CATG 6 cut(s) 633, 838, 927, 940, 1025, 1034
Fnu4HI GCNGC 3 cut(s) 6, 15, 147
FokI GGATG 4 cut(s) 112, 374, 572, 830
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 6, 15, 147
FspBI CTAG 1 cut(s) 735
GlaI GCGC 1 cut(s) 471
GluI GCNGC 3 cut(s) 6, 15, 147
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 31, 78, 135
HapII CCGG 1 cut(s) 915
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 6 cut(s) 637, 842, 931, 944, 1029, 1038
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HindIII AAGCTT 1 cut(s) 990
HinfI GANTC 6 cut(s) 382, 637, 731, 794, 851, 1060
HpaII CCGG 1 cut(s) 915
Hpy166II GTNNAC 1 cut(s) 957
Hpy188I TCNGA 3 cut(s) 352, 1045, 1070
Hpy188III TCNNGA 6 cut(s) 113, 153, 490, 735, 941, 1077
Hpy8I GTNNAC 1 cut(s) 957
Hpy99I CGWCG 5 cut(s) 119, 143, 146, 177, 338
HpyAV CCTTC 4 cut(s) 42, 220, 447, 991
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 8 cut(s) 221, 315, 341, 563, 572, 617, 680, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 84, 227, 478, 569
HpyF3I CTNAG 4 cut(s) 287, 302, 777, 975
HpySE526I ACGT 1 cut(s) 768
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 6 cut(s) 637, 842, 931, 944, 1029, 1038
HspAI GCGC 1 cut(s) 470
Kzo9I GATC 3 cut(s) 177, 522, 1000
LmnI GCTCC 4 cut(s) 13, 92, 512, 898
LweI GCATC 4 cut(s) 328, 550, 581, 808
MaeI CTAG 1 cut(s) 735
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 3 cut(s) 121, 276, 898
MalI GATC 3 cut(s) 179, 524, 1002
MboI GATC 3 cut(s) 177, 522, 1000
MboII GAAGA 6 cut(s) 305, 380, 527, 661, 789, 1069
MflI RGATCY 2 cut(s) 177, 1000
MhlI GDGCHC 2 cut(s) 89, 288
MluCI AATT 4 cut(s) 310, 484, 715, 1071
MluI ACGCGT 1 cut(s) 273
MlyI GAGTC 3 cut(s) 391, 740, 845
MmeI TCCRAC 3 cut(s) 114, 426, 795
MseI TTAA 2 cut(s) 318, 684
MslI CAYNNNNRTG 1 cut(s) 685
MspA1I CMGCKG 2 cut(s) 388, 512
MspI CCGG 1 cut(s) 915
MspR9I CCNGG 3 cut(s) 40, 915, 916
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 2 cut(s) 114, 275
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 84, 227, 478, 569
NciI CCSGG 2 cut(s) 915, 916
NdeII GATC 3 cut(s) 177, 522, 1000
NlaIII CATG 6 cut(s) 637, 842, 931, 944, 1029, 1038
NlaIV GGNNCC 2 cut(s) 9, 723
NmeAIII GCCGAG 2 cut(s) 54, 78
NmuCI GTSAC 1 cut(s) 898
NruI TCGCGA 1 cut(s) 114
PagI TCATGA 1 cut(s) 940
PfeI GAWTC 3 cut(s) 637, 794, 1060
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 3 cut(s) 7, 16, 148
PleI GAGTC 3 cut(s) 390, 739, 845
PpsI GAGTC 3 cut(s) 390, 739, 845
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 9, 723
PspPI GGNCC 2 cut(s) 29, 884
PsuI RGATCY 2 cut(s) 177, 1000
PsyI GACNNNGTC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 388
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 3 cut(s) 107, 754, 1040
RsaNI GTAC 3 cut(s) 106, 753, 1039
RseI CAYNNNNRTG 1 cut(s) 685
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 318, 684
SatI GCNGC 3 cut(s) 6, 15, 147
Sau3AI GATC 3 cut(s) 177, 522, 1000
Sau96I GGNCC 2 cut(s) 29, 884
SchI GAGTC 3 cut(s) 391, 740, 845
ScrFI CCNGG 3 cut(s) 40, 915, 916
SduI GDGCHC 2 cut(s) 89, 288
SfaNI GCATC 4 cut(s) 328, 550, 581, 808
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 1 cut(s) 884
SmaI CCCGGG 1 cut(s) 916
SmiMI CAYNNNNRTG 1 cut(s) 685
Sse9I AATT 4 cut(s) 310, 484, 715, 1071
SsiI CCGC 4 cut(s) 5, 147, 510, 601
SspI AATATT 1 cut(s) 242
SspMI CTAG 1 cut(s) 735
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 38, 913, 914
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 771
TaqI TCGA 1 cut(s) 138
TasI AATT 4 cut(s) 310, 484, 715, 1071
TatI WGTACW 1 cut(s) 105
TauI GCSGC 2 cut(s) 8, 149
TfiI GAWTC 3 cut(s) 637, 794, 1060
Tru1I TTAA 2 cut(s) 318, 684
Tru9I TTAA 2 cut(s) 318, 684
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 898
TspDTI ATGAA 3 cut(s) 381, 650, 929
TspGWI ACGGA 2 cut(s) 190, 238
TspMI CCCGGG 1 cut(s) 914
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 3 cut(s) 484, 715, 1071
XbaI TCTAGA 1 cut(s) 734
XmaI CCCGGG 1 cut(s) 914
XspI CTAG 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.