Rroxscaffold_6G00391730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000573
Physical Location & Seq
Forward (+)
10430524 .. 10438987
8464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391730.1

Sequence Viewer

Length: 396 bp
ATGAGGCGGGTCACATCGGGGTTGGATGCCTTCATCGCATCCTTCGAGGTGCTCAAAGATACGCTAGATCTTCATATTGTGAATCATTCGATTCCTCGTCATGCACATCGGTGCCACTTCATACATTCTATCCAGGACCCTCCATTGGCAAATAGTGTAGCTCACACTCTTGCTCAGACGGCTTTAGCCTCACAGTTGTCACATTCATGGCTTTTGTATGCTCCTGAATTCATTTGGGCCACATATTCAGCATTTACCACTGCTCCTTCTAACTTTGGGGATTCCATTTCCTTCCTCATATTGTCAAAAGACGCAATTAGGTCTTCAAGCACATTCTCTGCTATAAGCACCCAAGGACTCTTGGCAAGTCTCATTTCACTTCACTACCTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.46

Weight (kDa)

7.14

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AciI CCGC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 327
AjnI CCWGG 1 cut(s) 132
AleI CACNNNNGTG 1 cut(s) 109
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 374
AoxI GGCC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 136, 237
AvaII GGWCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 237
BmiI GGNNCC 2 cut(s) 113, 138
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 16, 47
BpiI GAAGAC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 31, 38
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 188
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 374
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 113, 138
BspT107I GGYRCC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 31, 38
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 35, 179
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 31, 38
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 136, 237
CseI GACGC 1 cut(s) 320
CviAII CATG 2 cut(s) 101, 207
CviJI RGCY 5 cut(s) 161, 182, 188, 211, 239
CviKI_1 RGCY 5 cut(s) 161, 182, 188, 211, 239
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 104, 210
FaiI YATR 8 cut(s) 75, 102, 122, 208, 219, 244, 299, 344
FatI CATG 2 cut(s) 100, 206
FokI GGATG 2 cut(s) 25, 38
FspBI CTAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 239
HgaI GACGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 104, 210
HinfI GANTC 4 cut(s) 82, 91, 281, 357
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 40, 52, 276, 301
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 179
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 104, 210
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 226, 268
LpnPI CCDG 3 cut(s) 119, 146, 237
LweI GCATC 2 cut(s) 16, 47
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 10, 198
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 2 cut(s) 62, 315
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 227, 315
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 5 cut(s) 40, 105, 150, 199, 305
MslI CAYNNNNRTG 2 cut(s) 109, 205
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 35, 179
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 104, 210
NlaIV GGNNCC 2 cut(s) 113, 138
NmuCI GTSAC 2 cut(s) 10, 198
OliI CACNNNNGTG 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 3 cut(s) 82, 91, 281
PfoI TCCNGGA 1 cut(s) 132
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 113, 138
PspPI GGNCC 2 cut(s) 136, 237
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 67
RseI CAYNNNNRTG 2 cut(s) 109, 205
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 2 cut(s) 136, 237
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 51, 163, 323, 390
SfaNI GCATC 2 cut(s) 16, 47
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 109, 205
Sse9I AATT 2 cut(s) 227, 315
SsiI CCGC 1 cut(s) 7
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 45, 89
TasI AATT 2 cut(s) 227, 315
TfiI GAWTC 3 cut(s) 82, 91, 281
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 10, 198
Tsp45I GTSAC 2 cut(s) 10, 198
TspDTI ATGAA 5 cut(s) 22, 62, 109, 195, 220
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 227
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.