Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026307.1

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 506

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

ctgctccaatttcctcagcctctacaaccgcgacgacggcgccacagccctgatcggcctcgacgacgccgcctcgcgcctcggcgtcgtccgccgccggatctacgacatcgtcaacgtgctggagagcgtcggactgctgtcaagaaagtcgacttcctcctacctggaaacccccagacgtcaagaaagtccaagaacacgtacacgtggaagggtttcggcgcggtccctaacgccctgaaggagctcagagaagaaggcctggatctgactccgatcccggcggcctgcaacaacaacaacaacccccaggatgagaccaagagggaaaagtctctggcgcttctggctcagaatttcgtgaagctgttcgtgtgtactggatccgaatcggaatcgatttctcttgatgaagccgcgaaattactgcttggagtaggggatccacagaatgtatcggtgatgaggacaaaggtgaggaggatctatgacattgcgaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

168

Amino Acids

19.19

Weight (kDa)

11.02

Isoelectric Point (pI)

76.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	4 cut(s)	31, 77, 227, 422
AciI	CCGC	7 cut(s)	29, 70, 92, 95, 227, 287, 420
AclWI	GGATC	8 cut(s)	108, 274, 276, 381, 394, 440, 453, 494
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	210
AcyI	GRCGYC	4 cut(s)	40, 67, 85, 182
AfaI	GTAC	2 cut(s)	206, 382
AflIII	ACRYGT	2 cut(s)	201, 207
AjnI	CCWGG	3 cut(s)	166, 264, 312
AluBI	AGCT	2 cut(s)	250, 370
AluI	AGCT	2 cut(s)	250, 370
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	314, 342
AlwI	GGATC	8 cut(s)	108, 274, 276, 381, 394, 440, 453, 494
AoxI	GGCC	3 cut(s)	56, 262, 288
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	2 cut(s)	218, 371
AspLEI	GCGC	4 cut(s)	42, 79, 227, 346
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	475, 490
AvaII	GGWCC	1 cut(s)	229
BamHI	GGATCC	2 cut(s)	386, 445
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	252
BbrPI	CACGTG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BciT130I	CCWGG	3 cut(s)	168, 266, 314
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	2 cut(s)	314, 342
BfoI	RGCGCY	2 cut(s)	43, 347
BisI	GCNGC	4 cut(s)	70, 95, 288, 420
BlsI	GCNGC	4 cut(s)	71, 96, 289, 421
Bme1390I	CCNGG	4 cut(s)	168, 266, 284, 314
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	4 cut(s)	41, 231, 388, 447
BmrFI	CCNGG	4 cut(s)	168, 266, 284, 314
BoxI	GACNNNNGTC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	401
BsaAI	YACGTR	2 cut(s)	204, 210
BsaBI	GATNNNNATC	1 cut(s)	391
BsaHI	GRCGYC	4 cut(s)	40, 67, 85, 182
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	80, 312
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	391
BseBI	CCWGG	3 cut(s)	168, 266, 314
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	80, 312
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	3 cut(s)	29, 265, 368
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	496
Bsh1236I	CGCG	4 cut(s)	31, 77, 227, 422
BshFI	GGCC	3 cut(s)	58, 264, 290
BshNI	GGYRCC	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	98, 284
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	314, 342
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	58, 264, 290
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
BspACI	CCGC	7 cut(s)	29, 70, 92, 95, 227, 287, 420
BspANI	GGCC	3 cut(s)	58, 264, 290
BspCNI	CTCAG	3 cut(s)	28, 264, 367
BspDI	ATCGAT	1 cut(s)	401
BspFNI	CGCG	4 cut(s)	31, 77, 227, 422
BspLI	GGNNCC	4 cut(s)	41, 231, 388, 447
BspPI	GGATC	8 cut(s)	108, 274, 276, 381, 394, 440, 453, 494
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	80, 312
BssMI	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
BssNI	GRCGYC	4 cut(s)	40, 67, 85, 182
Bst2UI	CCWGG	3 cut(s)	168, 266, 314
BstACI	GRCGYC	4 cut(s)	40, 67, 85, 182
BstBAI	YACGTR	2 cut(s)	204, 210
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	15, 251, 354
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	4 cut(s)	31, 77, 227, 422
BstH2I	RGCGCY	2 cut(s)	43, 347
BstHHI	GCGC	4 cut(s)	42, 79, 227, 346
BstKTI	GATC	7 cut(s)	55, 103, 271, 282, 389, 448, 489
BstMAI	GTCTC	2 cut(s)	314, 342
BstMBI	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 91, 350
BstNI	CCWGG	3 cut(s)	168, 266, 314
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	4 cut(s)	166, 264, 282, 312
BstUI	CGCG	4 cut(s)	31, 77, 227, 422
BstX2I	RGATCY	5 cut(s)	100, 268, 386, 445, 486
BstYI	RGATCY	5 cut(s)	100, 268, 386, 445, 486
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	58, 264, 290
BsuTUI	ATCGAT	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	4 cut(s)	42, 79, 227, 346
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	3 cut(s)	74, 75, 119
Csp6I	GTAC	2 cut(s)	205, 381
CviJI	RGCY	9 cut(s)	19, 48, 58, 250, 264, 290, 353, 370, 419
CviKI_1	RGCY	9 cut(s)	19, 48, 58, 250, 264, 290, 353, 370, 419
CviQI	GTAC	2 cut(s)	205, 381
DdeI	CTNAG	3 cut(s)	15, 251, 354
DinI	GGCGCC	1 cut(s)	41
DpnI	GATC	7 cut(s)	54, 102, 270, 281, 388, 447, 488
DpnII	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	3 cut(s)	166, 264, 312
EcoT38I	GRGCYC	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
FaiI	YATR	1 cut(s)	492
FaqI	GGGAC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	70, 95, 288, 420
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	4 cut(s)	70, 95, 288, 420
GlaI	GCGC	4 cut(s)	41, 78, 226, 345
GluI	GCNGC	4 cut(s)	70, 95, 288, 420
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	43, 347
HaeIII	GGCC	3 cut(s)	58, 264, 290
HapII	CCGG	2 cut(s)	98, 284
HgaI	GACGC	3 cut(s)	74, 75, 119
HhaI	GCGC	4 cut(s)	42, 79, 227, 346
Hin1I	GRCGYC	4 cut(s)	40, 67, 85, 182
Hin6I	GCGC	4 cut(s)	40, 77, 225, 344
HinP1I	GCGC	4 cut(s)	40, 77, 225, 344
HincII	GTYRAC	2 cut(s)	116, 154
HindII	GTYRAC	2 cut(s)	116, 154
HinfI	GANTC	3 cut(s)	274, 392, 398
HpaII	CCGG	2 cut(s)	98, 284
HphI	GGTGA	2 cut(s)	475, 490
Hpy166II	GTNNAC	4 cut(s)	116, 154, 207, 381
Hpy188I	TCNGA	7 cut(s)	135, 254, 273, 279, 357, 391, 397
Hpy188III	TCNNGA	4 cut(s)	145, 186, 364, 410
Hpy8I	GTNNAC	4 cut(s)	116, 154, 207, 381
Hpy99I	CGWCG	6 cut(s)	36, 39, 66, 69, 90, 135
HpyAV	CCTTC	3 cut(s)	208, 238, 254
HpyCH4IV	ACGT	4 cut(s)	118, 182, 203, 209
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 91, 350
HpyF3I	CTNAG	3 cut(s)	15, 251, 354
HpySE526I	ACGT	4 cut(s)	118, 182, 203, 209
Hsp92I	GRCGYC	4 cut(s)	40, 67, 85, 182
HspAI	GCGC	4 cut(s)	40, 77, 225, 344
KasI	GGCGCC	1 cut(s)	39
Kzo9I	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
LmnI	GCTCC	2 cut(s)	9, 247
MaeII	ACGT	4 cut(s)	118, 182, 203, 209
MalI	GATC	7 cut(s)	54, 102, 270, 281, 388, 447, 488
MboI	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
MboII	GAAGA	1 cut(s)	269
MflI	RGATCY	5 cut(s)	100, 268, 386, 445, 486
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	8, 358, 425
Mly113I	GGCGCC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	218, 371
MspI	CCGG	2 cut(s)	98, 284
MspR9I	CCNGG	4 cut(s)	168, 266, 284, 314
MvaI	CCWGG	3 cut(s)	168, 266, 314
MvnI	CGCG	4 cut(s)	31, 77, 227, 422
MwoI	GCNNNNNNNGC	3 cut(s)	37, 91, 350
NarI	GGCGCC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
NlaIV	GGNNCC	4 cut(s)	41, 231, 388, 447
NmeAIII	GCCGAG	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PdmI	GAANNNNTTC	2 cut(s)	218, 371
PfeI	GAWTC	2 cut(s)	392, 398
PflFI	GACNNNGTC	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	71, 96, 289, 421
PleI	GAGTC	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	2 cut(s)	204, 210
PshAI	GACNNNNGTC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	3 cut(s)	166, 264, 312
PspCI	CACGTG	1 cut(s)	210
PspGI	CCWGG	3 cut(s)	166, 264, 312
PspN4I	GGNNCC	4 cut(s)	41, 231, 388, 447
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	5 cut(s)	100, 268, 386, 445, 486
PsyI	GACNNNGTC	1 cut(s)	111
RsaI	GTAC	2 cut(s)	206, 382
RsaNI	GTAC	2 cut(s)	205, 381
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	152
SatI	GCNGC	4 cut(s)	70, 95, 288, 420
Sau3AI	GATC	7 cut(s)	52, 100, 268, 279, 386, 445, 486
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	4 cut(s)	168, 266, 284, 314
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	121, 169, 185, 206, 212, 252, 372, 480
SfoI	GGCGCC	1 cut(s)	41
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	3 cut(s)	8, 358, 425
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	7 cut(s)	29, 70, 92, 95, 227, 287, 420
SspDI	GGCGCC	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	4 cut(s)	166, 264, 282, 312
TaiI	ACGT	4 cut(s)	121, 185, 206, 212
TaqI	TCGA	3 cut(s)	61, 153, 401
TasI	AATT	3 cut(s)	8, 358, 425
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	4 cut(s)	72, 97, 290, 422
TfiI	GAWTC	2 cut(s)	392, 398
TspDTI	ATGAA	1 cut(s)	429
Tth111I	GACNNNGTC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	2 cut(s)	218, 371
ZraI	GACGTC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.