Rh2CG334400

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
43982204 .. 43984003
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG334400.1

Sequence Viewer

Length: 294 bp
ATGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCTGTGGGGCGAATTCGAATGAGAGTTCGAAGAGCTACCAGCTTGGTCTTTTCGCTCCGGTGGCGGTTCCAAGAGCTACGAAGGGTGTTGACATCAACAAGGTTTGCTGGGAGAGTCTTGGGGCTTATTATCGGCCTCAGTATCAGAACCAAGCGTTGAAGGAGCTATTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Protein Analysis

97

Amino Acids

10.98

Weight (kDa)

5.76

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 64
AgsI TTSAA 2 cut(s) 17, 211
AjuI GAANNNNNNNTTGG 1 cut(s) 271
AluBI AGCT 4 cut(s) 87, 94, 128, 217
AluI AGCT 4 cut(s) 87, 94, 128, 217
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 2 cut(s) 68, 80
BccI CCATC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 120
Bpu14I TTCGAA 2 cut(s) 68, 80
BpuEI CTTGAG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 109
BseGI GGATG 2 cut(s) 55, 249
BseMII CTCAG 2 cut(s) 203, 258
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 187
Bsp119I TTCGAA 2 cut(s) 68, 80
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 202, 259
BspLI GGNNCC 1 cut(s) 120
BspQI GCTCTTC 1 cut(s) 77
BspT104I TTCGAA 2 cut(s) 68, 80
BssMI GATC 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 2, 77
BstBI TTCGAA 2 cut(s) 68, 80
BstDEI CTNAG 2 cut(s) 189, 267
BstF5I GGATG 2 cut(s) 55, 249
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 55, 249
CviJI RGCY 7 cut(s) 54, 87, 94, 128, 176, 187, 217
CviKI_1 RGCY 7 cut(s) 54, 87, 94, 128, 176, 187, 217
DdeI CTNAG 2 cut(s) 189, 267
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 2, 77
EarI CTCTTC 2 cut(s) 2, 77
EcoRI GAATTC 1 cut(s) 64
FaiI YATR 1 cut(s) 231
FokI GGATG 2 cut(s) 62, 256
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 166, 274
HpaII CCGG 1 cut(s) 110
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 49, 198, 285
Hpy188III TCNNGA 2 cut(s) 17, 291
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 127, 205
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 189, 267
Kzo9I GATC 1 cut(s) 19
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 112, 214
LpnPI CCDG 4 cut(s) 8, 104, 123, 145
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 19, 94, 283
MluCI AATT 3 cut(s) 43, 64, 279
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 2 cut(s) 22, 198
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 120
NspV TTCGAA 2 cut(s) 68, 80
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 274
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 1 cut(s) 175
SetI ASST 6 cut(s) 33, 89, 96, 130, 156, 219
SfuI TTCGAA 2 cut(s) 68, 80
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 3 cut(s) 43, 64, 279
SsiI CCGC 1 cut(s) 116
TaqI TCGA 2 cut(s) 68, 80
TasI AATT 3 cut(s) 43, 64, 279
TfiI GAWTC 1 cut(s) 274
XapI RAATTY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.