Rorug06G0428400

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
56481616 .. 56482017
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0428400.1

Sequence Viewer

Length: 402 bp
ATGCACAATATTAGGCATAATCCAAGACCATTATCAGAGAGCTTTATCATACAAGTAAGGAGTGAAGAAGAAGCTGCCTCTCCCAAGTTGAATTTGTCTGCAATGAAAATCTTCAATCGTTTCCGAAAAATTATAATGAAACTTCTGTTTTCCATCCCCTCACCATCAGCAACTACACAGCATGGAATGAGTAGCAGTACTCCCAGGAAAAGAAACAGCACTAGCTGTGACAGATTTGAGCCCCCAAAGACTTCATGCAGTTCGTATTACTCTTCTCATTCGCATTACAACGAGGCCATCTCTGACTGCATCGAGTTCTTTAACAAGTCTAGCCAAGAGGATCATGAAGCCGGAGGGATGATTTCGGATGATCCAGATCAGTCCGGCTGCCATATGGTTTGA

Protein Analysis

133

Amino Acids

15.03

Weight (kDa)

7.05

Isoelectric Point (pI)

82.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AclWI GGATC 2 cut(s) 348, 365
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 2 cut(s) 91, 115
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 3 cut(s) 42, 74, 225
AluI AGCT 3 cut(s) 42, 74, 225
AlwI GGATC 2 cut(s) 348, 365
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 74, 387
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 153
BanII GRGCYC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 61, 374
BccI CCATC 3 cut(s) 161, 172, 305
BciT130I CCWGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 222, 330
BisI GCNGC 2 cut(s) 75, 388
BlsI GCNGC 2 cut(s) 76, 389
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 3 cut(s) 153, 363, 373
BseJI GATNNNNATC 1 cut(s) 375
BseMI GCAATG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 61, 374
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 2 cut(s) 351, 384
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 340, 370, 376
BspANI GGCC 1 cut(s) 296
BspHI TCATGA 1 cut(s) 343
BspPI GGATC 2 cut(s) 348, 365
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 3 cut(s) 340, 370, 376
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 277
BstF5I GGATG 3 cut(s) 153, 363, 373
BstKTI GATC 3 cut(s) 343, 373, 379
BstMBI GATC 3 cut(s) 340, 370, 376
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 61, 374
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 3 cut(s) 153, 363, 373
CciI TCATGA 1 cut(s) 343
Csp6I GTAC 1 cut(s) 198
CviAII CATG 3 cut(s) 182, 255, 344
CviJI RGCY 8 cut(s) 42, 74, 225, 241, 296, 333, 350, 387
CviKI_1 RGCY 8 cut(s) 42, 74, 225, 241, 296, 333, 350, 387
CviQI GTAC 1 cut(s) 198
DpnI GATC 3 cut(s) 342, 372, 378
DpnII GATC 3 cut(s) 340, 370, 376
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 3 cut(s) 185, 258, 347
FaiI YATR 8 cut(s) 18, 50, 134, 183, 256, 345, 393, 395
FatI CATG 3 cut(s) 181, 254, 343
FauNDI CATATG 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 75, 388
FokI GGATG 3 cut(s) 140, 370, 380
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 75, 388
FspBI CTAG 2 cut(s) 222, 330
GluI GCNGC 2 cut(s) 75, 388
HaeIII GGCC 1 cut(s) 296
HapII CCGG 2 cut(s) 351, 384
Hin1II CATG 3 cut(s) 185, 258, 347
HpaII CCGG 2 cut(s) 351, 384
HphI GGTGA 1 cut(s) 153
Hpy188I TCNGA 4 cut(s) 37, 125, 304, 367
Hpy188III TCNNGA 2 cut(s) 344, 374
HpyCH4V TGCA 4 cut(s) 4, 101, 258, 309
Hsp92II CATG 3 cut(s) 185, 258, 347
Kzo9I GATC 3 cut(s) 340, 370, 376
LpnPI CCDG 5 cut(s) 190, 217, 364, 387, 397
Lsp1109I GCAGC 2 cut(s) 61, 374
LweI GCATC 1 cut(s) 318
MaeI CTAG 2 cut(s) 222, 330
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 342, 372, 378
MboI GATC 3 cut(s) 340, 370, 376
MboII GAAGA 4 cut(s) 77, 80, 103, 264
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 91, 129
MnlI CCTC 5 cut(s) 88, 169, 286, 331, 347
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 1 cut(s) 321
MspI CCGG 2 cut(s) 351, 384
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
NdeI CATATG 1 cut(s) 393
NdeII GATC 3 cut(s) 340, 370, 376
NlaIII CATG 3 cut(s) 185, 258, 347
NmuCI GTSAC 1 cut(s) 227
PagI TCATGA 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 76, 389
PsiI TTATAA 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 75, 388
Sau3AI GATC 3 cut(s) 340, 370, 376
ScaI AGTACT 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 243
SetI ASST 3 cut(s) 44, 76, 227
SfaNI GCATC 1 cut(s) 318
Sse9I AATT 2 cut(s) 91, 129
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 222, 330
StyD4I CCNGG 1 cut(s) 203
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 91, 129
TatI WGTACW 1 cut(s) 197
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 74, 387
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 4 cut(s) 119, 152, 243, 360
XapI RAATTY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 222, 330
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.