Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

44028304 .. 44028624

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGGACGAAGGTGAGGAGGATCTATGACACTGCGAATGTGTTGTCGTCGGTGAATTTGATTGAGAAGACTCATACGGCGGATACAGGGAAACCGGCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCCGAATTTGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATATGACGAATTCGAGTAGTAAGAGGAGCAAGGTTATGGAGAAGAGAGTTCAAGATGAGGGTGAGGTTGAGAACTGCAATTCGAATGGCTGTGGGGCGAATTCGAAGGAGAGTTCGAAGAGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

106

Amino Acids

11.84

Weight (kDa)

9.55

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	2 - 38	1.5e-09	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	6 cut(s)	55, 139, 145, 157, 202, 292
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	139, 145, 245
AluBI	AGCT	2 cut(s)	183, 315
AluI	AGCT	2 cut(s)	183, 315
AlwI	GGATC	1 cut(s)	29
ApoI	RAATTY	6 cut(s)	55, 139, 145, 157, 202, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AsuHPI	GGTGA	3 cut(s)	25, 64, 266
AsuII	TTCGAA	3 cut(s)	275, 296, 308
BbsI	GAAGAC	1 cut(s)	74
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	74
Bpu14I	TTCGAA	3 cut(s)	275, 296, 308
Bse118I	RCCGGY	1 cut(s)	94
BseRI	GAGGAG	3 cut(s)	31, 193, 232
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
Bsp119I	TTCGAA	3 cut(s)	275, 296, 308
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	3 cut(s)	275, 296, 308
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	1 cut(s)	21
Bst6I	CTCTTC	4 cut(s)	121, 170, 230, 305
BstBI	TTCGAA	3 cut(s)	275, 296, 308
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	100
CviJI	RGCY	6 cut(s)	115, 154, 170, 183, 282, 315
CviKI_1	RGCY	6 cut(s)	115, 154, 170, 183, 282, 315
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	4 cut(s)	121, 170, 230, 305
EarI	CTCTTC	4 cut(s)	121, 170, 230, 305
EciI	GGCGGA	1 cut(s)	95
EcoRI	GAATTC	3 cut(s)	145, 202, 292
FaiI	YATR	4 cut(s)	27, 75, 197, 230
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	202
FspBI	CTAG	1 cut(s)	319
HapII	CCGG	1 cut(s)	95
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	25, 64, 266
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	4, 292
HpyCH4V	TGCA	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	4 cut(s)	151, 163, 180, 219
LpnPI	CCDG	4 cut(s)	72, 88, 108, 152
MaeI	CTAG	1 cut(s)	319
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	4 cut(s)	79, 138, 187, 247
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	7 cut(s)	55, 139, 145, 157, 202, 271, 292
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	9, 12, 171, 210, 244, 250
MspI	CCGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	153
NspV	TTCGAA	3 cut(s)	275, 296, 308
PciSI	GCTCTTC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	64
SetI	ASST	6 cut(s)	15, 107, 185, 228, 261, 317
SfuI	TTCGAA	3 cut(s)	275, 296, 308
SgeI	CNNG	7 cut(s)	99, 107, 115, 179, 219, 235, 257
Sse9I	AATT	7 cut(s)	55, 139, 145, 157, 202, 271, 292
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	319
TaqI	TCGA	4 cut(s)	206, 275, 296, 308
TasI	AATT	7 cut(s)	55, 139, 145, 157, 202, 271, 292
TscAI	CASTG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	6 cut(s)	55, 139, 145, 157, 202, 292
XspI	CTAG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.