Rroxscaffold_1G00027630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000573
Physical Location & Seq
Forward (+)
35023586 .. 35023876
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027630.1

Sequence Viewer

Length: 291 bp
ATGAATGCAAGTAGTAAGAGCAAGGTTGTGGAGAAGGGAGTTCAAGATCAAGGTGAGGTTGGGAACTGCAATTCGAATGGCTGTGGGGCGAAGGAGAGTTCGAAGAGCGGCCAGCTTGGTCCTTTCGCTCCGGTGGCAGTTCCAAGAACTAAGAAAGGTGTTGACATCAACAAGGTTGCTGGGAGAGTCTTGGACTCTTGGGGCTTATTATTGGCCTCGGTATCGAACTGCCAAGGGAAAAAGAAGAGTTCGGAAACTTCATGCCACAAGCCATTACGTGCTCGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

9.99

Weight (kDa)

9.68

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 109
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 283
AoxI GGCC 2 cut(s) 109, 213
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 65
AsuII TTCGAA 2 cut(s) 74, 101
AvaII GGWCC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 283
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
Bpu14I TTCGAA 2 cut(s) 74, 101
BsaAI YACGTR 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 216, 232
BsaWI WCCGGW 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 216, 232
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 2 cut(s) 111, 215
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 131
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 111, 215
Bsp119I TTCGAA 2 cut(s) 74, 101
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 111, 215
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 2 cut(s) 74, 101
BsrBI CCGCTC 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 216, 232
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 98, 239
BstBAI YACGTR 1 cut(s) 278
BstBI TTCGAA 2 cut(s) 74, 101
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 134
BsuRI GGCC 2 cut(s) 111, 215
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 119
CviAII CATG 1 cut(s) 261
CviJI RGCY 6 cut(s) 81, 111, 115, 204, 215, 271
CviKI_1 RGCY 6 cut(s) 81, 111, 115, 204, 215, 271
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 98, 239
EarI CTCTTC 2 cut(s) 98, 239
Eco130I CCWWGG 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 264
FaiI YATR 1 cut(s) 262
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 111, 215
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 264
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 186, 194
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 28, 85
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 8, 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 125, 144, 165
MaeII ACGT 1 cut(s) 277
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 108
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 115, 256
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 70
MlyI GAGTC 2 cut(s) 188, 195
MnlI CCTC 2 cut(s) 49, 226
MspI CCGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 264
NspV TTCGAA 2 cut(s) 74, 101
PciSI GCTCTTC 1 cut(s) 98
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 2 cut(s) 188, 194
PpsI GAGTC 2 cut(s) 188, 194
Ppu21I YACGTR 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 98
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 2 cut(s) 188, 195
SduI GDGCHC 1 cut(s) 283
SetI ASST 7 cut(s) 27, 55, 60, 117, 160, 177, 280
SfuI TTCGAA 2 cut(s) 74, 101
SinI GGWCC 1 cut(s) 119
Sse9I AATT 1 cut(s) 70
SsiI CCGC 1 cut(s) 108
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 74, 101, 224
TasI AATT 1 cut(s) 70
TauI GCSGC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 17, 249
VpaK11BI GGWCC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.