Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

13646916 .. 13647750

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG173900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCGCTTCCTCCTACCCGGAAACCCCCCAGACGTCAAGAAAGTCCAAGAACACGTACACGTGGAAGGGTTTCGGCGAGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGTGGCCTGCAATAACAACAACAACAATCCCCTGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCGCAGAATTTCGTGAAGTTGTTCGTGTGTACCGGATCGGAATCGGAATCGATTTCTCTTGATGAAGCTGCGAAATTACTACTTGGAGTAGGGGATGCACAGAATGTATCGGTGATGAGGACGAAGGGAAGCCCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCCGAATTTGGAGCAGGCTAAGAAGAGGAACTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCTGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCCTTTCGCTCCGGTGGCGGTTCCAAGAGCTAGGAAGGGTGTTGACATCAATAAGGTTTGCTGGGAGAGTCTTGGGGCTTATTATCGGCCTCAGTATCAGAACCAAGCGATGAAGGAGCTGTTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

252

Amino Acids

28.09

Weight (kDa)

8.86

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AciI	CCGC	2 cut(s)	6, 581
AclWI	GGATC	3 cut(s)	127, 129, 250
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	214, 382, 388, 400
AcuI	CTGAAG	1 cut(s)	116
AcvI	CACGTG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	3 cut(s)	59, 238, 344
AflIII	ACRYGT	2 cut(s)	54, 60
AgsI	TTSAA	3 cut(s)	382, 388, 488
AjnI	CCWGG	2 cut(s)	117, 168
AjuI	GAANNNNNNNTTGG	1 cut(s)	736
AluBI	AGCT	5 cut(s)	103, 275, 552, 593, 682
AluI	AGCT	5 cut(s)	103, 275, 552, 593, 682
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	170, 198
AlwI	GGATC	3 cut(s)	127, 129, 250
AoxI	GGCC	4 cut(s)	3, 115, 141, 650
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	4 cut(s)	214, 382, 388, 400
Asp700I	GAANNNNTTC	2 cut(s)	71, 227
AspLEI	GCGC	2 cut(s)	202, 211
AspS9I	GGNCC	2 cut(s)	82, 563
AsuC2I	CCSGG	2 cut(s)	20, 137
AsuHPI	GGTGA	2 cut(s)	331, 509
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	82, 563
BanII	GRGCYC	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	368, 515
BciT130I	CCWGG	2 cut(s)	119, 170
BcnI	CCSGG	2 cut(s)	20, 137
BcoDI	GTCTC	2 cut(s)	170, 198
BfaI	CTAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	203
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	2 cut(s)	6, 276
BlsI	GCNGC	2 cut(s)	7, 277
Bme1390I	CCNGG	4 cut(s)	20, 119, 137, 170
Bme18I	GGWCC	2 cut(s)	82, 563
BmgT120I	GGNCC	2 cut(s)	82, 563
BmiI	GGNNCC	3 cut(s)	84, 396, 585
BmrFI	CCNGG	4 cut(s)	20, 119, 137, 170
BmsI	GCATC	1 cut(s)	292
Bpu14I	TTCGAA	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	2 cut(s)	20, 137
Bsa29I	ATCGAT	1 cut(s)	257
BsaAI	YACGTR	2 cut(s)	57, 63
BsaBI	GATNNNNATC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	2 cut(s)	239, 574
Bse1I	ACTGG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	119, 170
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	4 cut(s)	178, 307, 526, 714
BseJI	GATNNNNATC	1 cut(s)	247
BseMII	CTCAG	3 cut(s)	118, 668, 723
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	624
BshFI	GGCC	4 cut(s)	5, 117, 143, 652
BshVI	ATCGAT	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	4 cut(s)	20, 137, 240, 575
BslFI	GGGAC	2 cut(s)	68, 445
BsmAI	GTCTC	2 cut(s)	170, 198
BsmFI	GGGAC	2 cut(s)	68, 445
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	5, 117, 143, 652
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	5 cut(s)	121, 132, 242, 436, 490
BspACI	CCGC	2 cut(s)	6, 581
BspANI	GGCC	4 cut(s)	5, 117, 143, 652
BspCNI	CTCAG	3 cut(s)	117, 667, 724
BspDI	ATCGAT	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	84, 396, 585
BspPI	GGATC	3 cut(s)	127, 129, 250
BspQI	GCTCTTC	1 cut(s)	542
BspT104I	TTCGAA	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	121, 132, 242, 436, 490
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	119, 170
Bst6I	CTCTTC	4 cut(s)	364, 413, 473, 542
BstACI	GRCGYC	1 cut(s)	35
BstBAI	YACGTR	2 cut(s)	57, 63
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	145, 411
BstDEI	CTNAG	4 cut(s)	104, 414, 654, 732
BstF5I	GGATG	4 cut(s)	178, 307, 526, 714
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 211
BstKTI	GATC	5 cut(s)	124, 135, 245, 439, 493
BstMAI	GTCTC	2 cut(s)	170, 198
BstMBI	GATC	5 cut(s)	121, 132, 242, 436, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 208, 578
BstNI	CCWGG	2 cut(s)	119, 170
BstSCI	CCNGG	4 cut(s)	18, 117, 135, 168
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	2 cut(s)	121, 436
BstYI	RGATCY	2 cut(s)	121, 436
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	5, 117, 143, 652
BsuTUI	ATCGAT	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	178, 307, 526, 714
Cac8I	GCNNGC	2 cut(s)	145, 411
CfoI	GCGC	2 cut(s)	202, 211
Cfr13I	GGNCC	2 cut(s)	82, 563
ClaI	ATCGAT	1 cut(s)	257
Csp6I	GTAC	3 cut(s)	58, 237, 343
CviQI	GTAC	3 cut(s)	58, 237, 343
DdeI	CTNAG	4 cut(s)	104, 414, 654, 732
DpnI	GATC	5 cut(s)	123, 134, 244, 438, 492
DpnII	GATC	5 cut(s)	121, 132, 242, 436, 490
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	364, 413, 473, 542
EarI	CTCTTC	4 cut(s)	364, 413, 473, 542
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	82, 563
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	116
Eco72I	CACGTG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	117, 168
EcoT38I	GRGCYC	1 cut(s)	105
FaiI	YATR	1 cut(s)	696
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	2 cut(s)	68, 445
Fnu4HI	GCNGC	2 cut(s)	6, 276
FokI	GGATG	4 cut(s)	185, 314, 533, 721
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	6, 276
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	2 cut(s)	201, 210
GluI	GCNGC	2 cut(s)	6, 276
GsaI	CCCAGC	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	5, 117, 143, 652
HapII	CCGG	4 cut(s)	20, 137, 240, 575
HhaI	GCGC	2 cut(s)	202, 211
Hin1I	GRCGYC	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	200, 209
HinP1I	GCGC	2 cut(s)	200, 209
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	5 cut(s)	127, 248, 254, 631, 739
HpaII	CCGG	4 cut(s)	20, 137, 240, 575
HphI	GGTGA	2 cut(s)	331, 509
Hpy166II	GTNNAC	3 cut(s)	60, 237, 607
Hpy188III	TCNNGA	5 cut(s)	39, 220, 266, 488, 756
Hpy8I	GTNNAC	3 cut(s)	60, 237, 607
HpyAV	CCTTC	7 cut(s)	61, 91, 107, 325, 529, 592, 670
HpyCH4IV	ACGT	3 cut(s)	35, 56, 62
HpyCH4V	TGCA	3 cut(s)	147, 305, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 208, 578
HpyF3I	CTNAG	4 cut(s)	104, 414, 654, 732
HpySE526I	ACGT	3 cut(s)	35, 56, 62
Hsp92I	GRCGYC	1 cut(s)	35
HspAI	GCGC	2 cut(s)	200, 209
Kzo9I	GATC	5 cut(s)	121, 132, 242, 436, 490
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	6 cut(s)	100, 394, 406, 462, 577, 679
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	3 cut(s)	35, 56, 62
MalI	GATC	5 cut(s)	123, 134, 244, 438, 492
MboI	GATC	5 cut(s)	121, 132, 242, 436, 490
MboII	GAAGA	6 cut(s)	122, 381, 430, 490, 559, 748
MflI	RGATCY	2 cut(s)	121, 436
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	7 cut(s)	214, 281, 382, 388, 400, 514, 744
MlyI	GAGTC	2 cut(s)	121, 640
MnlI	CCTC	8 cut(s)	22, 73, 177, 318, 414, 453, 493, 663
MroXI	GAANNNNTTC	2 cut(s)	71, 227
MspI	CCGG	4 cut(s)	20, 137, 240, 575
MspR9I	CCNGG	4 cut(s)	20, 119, 137, 170
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	119, 170
MwoI	GCNNNNNNNGC	3 cut(s)	206, 208, 578
NciI	CCSGG	2 cut(s)	20, 137
NdeII	GATC	5 cut(s)	121, 132, 242, 436, 490
NlaIV	GGNNCC	3 cut(s)	84, 396, 585
NspV	TTCGAA	1 cut(s)	545
PceI	AGGCCT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	542
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	2 cut(s)	71, 227
PfeI	GAWTC	3 cut(s)	248, 254, 739
PkrI	GCNGC	2 cut(s)	7, 277
PleI	GAGTC	2 cut(s)	121, 639
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
PpsI	GAGTC	2 cut(s)	121, 639
Ppu21I	YACGTR	2 cut(s)	57, 63
PpuMI	RGGWCCY	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	117, 168
PspCI	CACGTG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	117, 168
PspN4I	GGNNCC	3 cut(s)	84, 396, 585
PspPI	GGNCC	2 cut(s)	82, 563
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	121, 436
RsaI	GTAC	3 cut(s)	59, 238, 344
RsaNI	GTAC	3 cut(s)	58, 237, 343
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	542
SatI	GCNGC	2 cut(s)	6, 276
Sau3AI	GATC	5 cut(s)	121, 132, 242, 436, 490
Sau96I	GGNCC	2 cut(s)	82, 563
SchI	GAGTC	2 cut(s)	121, 640
ScrFI	CCNGG	4 cut(s)	20, 119, 137, 170
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	2 cut(s)	82, 563
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	7 cut(s)	214, 281, 382, 388, 400, 514, 744
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	6, 581
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	18, 117, 135, 168
TaiI	ACGT	3 cut(s)	38, 59, 65
TaqI	TCGA	2 cut(s)	257, 545
TasI	AATT	7 cut(s)	214, 281, 382, 388, 400, 514, 744
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	248, 254, 739
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	285, 689
VpaK11BI	GGWCC	2 cut(s)	82, 563
XapI	RAATTY	4 cut(s)	214, 382, 388, 400
XmnI	GAANNNNTTC	2 cut(s)	71, 227
XspI	CTAG	1 cut(s)	594
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.