E2F transcription factor-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_E2F_TDP | PF02319 | 76 - 153 | 4e-15 | E2F/DP family winged-helix DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 185 |
| AccII | CGCG | 1 cut(s) | 113 |
| AciI | CCGC | 1 cut(s) | 113 |
| AclWI | GGATC | 4 cut(s) | 160, 162, 274, 374 |
| AcoI | YGGCCR | 1 cut(s) | 37 |
| AcsI | RAATTY | 5 cut(s) | 238, 400, 484, 490, 502 |
| AcuI | CTGAAG | 1 cut(s) | 149 |
| AfaI | GTAC | 3 cut(s) | 92, 262, 446 |
| AflIII | ACRYGT | 1 cut(s) | 87 |
| AgsI | TTSAA | 4 cut(s) | 72, 484, 490, 590 |
| AjnI | CCWGG | 3 cut(s) | 52, 150, 201 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 838 |
| AleI | CACNNNNGTG | 1 cut(s) | 677 |
| AluBI | AGCT | 8 cut(s) | 22, 136, 250, 299, 528, 654, 695, 784 |
| AluI | AGCT | 8 cut(s) | 22, 136, 250, 299, 528, 654, 695, 784 |
| Alw21I | GWGCWC | 2 cut(s) | 24, 138 |
| Alw26I | GTCTC | 2 cut(s) | 203, 231 |
| AlwI | GGATC | 4 cut(s) | 160, 162, 274, 374 |
| AoxI | GGCC | 4 cut(s) | 37, 148, 457, 752 |
| ApeKI | GCWGC | 1 cut(s) | 299 |
| ApoI | RAATTY | 5 cut(s) | 238, 400, 484, 490, 502 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 104, 251 |
| AspLEI | GCGC | 2 cut(s) | 113, 235 |
| AspS9I | GGNCC | 2 cut(s) | 115, 457 |
| AsuC2I | CCSGG | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 2 cut(s) | 355, 611 |
| AsuII | TTCGAA | 1 cut(s) | 647 |
| AvaII | GGWCC | 1 cut(s) | 115 |
| BalI | TGGCCA | 1 cut(s) | 39 |
| BanII | GRGCYC | 2 cut(s) | 24, 138 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 428, 460 |
| BbsI | GAAGAC | 1 cut(s) | 419 |
| Bbv12I | GWGCWC | 2 cut(s) | 24, 138 |
| BbvI | GCAGC | 1 cut(s) | 286 |
| BccI | CCATC | 2 cut(s) | 470, 617 |
| BceAI | ACGGC | 1 cut(s) | 438 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 292, 326 |
| BciT130I | CCWGG | 3 cut(s) | 54, 152, 203 |
| BcnI | CCSGG | 1 cut(s) | 170 |
| BcoDI | GTCTC | 2 cut(s) | 203, 231 |
| BfaI | CTAG | 1 cut(s) | 696 |
| BfuAI | ACCTGC | 1 cut(s) | 185 |
| BglII | AGATCT | 1 cut(s) | 538 |
| BisI | GCNGC | 1 cut(s) | 300 |
| BlsI | GCNGC | 1 cut(s) | 301 |
| Bme1390I | CCNGG | 4 cut(s) | 54, 152, 170, 203 |
| Bme18I | GGWCC | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 457 |
| BmiI | GGNNCC | 2 cut(s) | 117, 687 |
| BmrFI | CCNGG | 4 cut(s) | 54, 152, 170, 203 |
| BmsI | GCATC | 2 cut(s) | 316, 538 |
| BpiI | GAAGAC | 1 cut(s) | 419 |
| Bpu14I | TTCGAA | 1 cut(s) | 647 |
| BpuEI | CTTGAG | 1 cut(s) | 810 |
| BpuMI | CCSGG | 1 cut(s) | 170 |
| Bsa29I | ATCGAT | 1 cut(s) | 281 |
| BsaAI | YACGTR | 1 cut(s) | 90 |
| BsaBI | GATNNNNATC | 1 cut(s) | 271 |
| BsaI | GGTCTC | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 2 cut(s) | 34, 201 |
| BsaWI | WCCGGW | 2 cut(s) | 263, 676 |
| Bse118I | RCCGGY | 1 cut(s) | 439 |
| Bse1I | ACTGG | 1 cut(s) | 658 |
| Bse3DI | GCAATG | 2 cut(s) | 375, 780 |
| Bse8I | GATNNNNATC | 1 cut(s) | 271 |
| BseBI | CCWGG | 3 cut(s) | 54, 152, 203 |
| BseCI | ATCGAT | 1 cut(s) | 281 |
| BseDI | CCNNGG | 2 cut(s) | 34, 201 |
| BseGI | GGATG | 5 cut(s) | 211, 331, 553, 628, 816 |
| BseJI | GATNNNNATC | 1 cut(s) | 271 |
| BseMI | GCAATG | 2 cut(s) | 375, 780 |
| BseMII | CTCAG | 2 cut(s) | 151, 770 |
| BseNI | ACTGG | 1 cut(s) | 658 |
| BseRI | GAGGAG | 3 cut(s) | 376, 538, 577 |
| BseXI | GCAGC | 1 cut(s) | 286 |
| BseYI | CCCAGC | 1 cut(s) | 726 |
| Bsh1236I | CGCG | 1 cut(s) | 113 |
| BshFI | GGCC | 4 cut(s) | 39, 150, 459, 754 |
| BshVI | ATCGAT | 1 cut(s) | 281 |
| BsiHKAI | GWGCWC | 2 cut(s) | 24, 138 |
| BsiSI | CCGG | 4 cut(s) | 170, 264, 440, 677 |
| BslFI | GGGAC | 2 cut(s) | 101, 547 |
| BsmAI | GTCTC | 2 cut(s) | 203, 231 |
| BsmFI | GGGAC | 2 cut(s) | 101, 547 |
| BsnI | GGCC | 4 cut(s) | 39, 150, 459, 754 |
| Bso31I | GGTCTC | 1 cut(s) | 203 |
| Bsp119I | TTCGAA | 1 cut(s) | 647 |
| Bsp1286I | GDGCHC | 2 cut(s) | 24, 138 |
| Bsp143I | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| Bsp19I | CCATGG | 1 cut(s) | 34 |
| BspACI | CCGC | 1 cut(s) | 113 |
| BspANI | GGCC | 4 cut(s) | 39, 150, 459, 754 |
| BspCNI | CTCAG | 2 cut(s) | 150, 769 |
| BspDI | ATCGAT | 1 cut(s) | 281 |
| BspFNI | CGCG | 1 cut(s) | 113 |
| BspLI | GGNNCC | 2 cut(s) | 117, 687 |
| BspMI | ACCTGC | 1 cut(s) | 185 |
| BspPI | GGATC | 4 cut(s) | 160, 162, 274, 374 |
| BspQI | GCTCTTC | 1 cut(s) | 644 |
| BspT104I | TTCGAA | 1 cut(s) | 647 |
| BspTNI | GGTCTC | 1 cut(s) | 203 |
| BsrDI | GCAATG | 2 cut(s) | 375, 780 |
| BsrFI | RCCGGY | 1 cut(s) | 439 |
| BsrI | ACTGG | 1 cut(s) | 658 |
| BssAI | RCCGGY | 1 cut(s) | 439 |
| BssECI | CCNNGG | 2 cut(s) | 34, 201 |
| BssMI | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| BssT1I | CCWWGG | 1 cut(s) | 34 |
| Bst2UI | CCWGG | 3 cut(s) | 54, 152, 203 |
| Bst6I | CTCTTC | 4 cut(s) | 466, 515, 575, 644 |
| BstBAI | YACGTR | 1 cut(s) | 90 |
| BstBI | TTCGAA | 1 cut(s) | 647 |
| BstC8I | GCNNGC | 3 cut(s) | 24, 441, 513 |
| BstDEI | CTNAG | 4 cut(s) | 137, 516, 756, 834 |
| BstDSI | CCRYGG | 1 cut(s) | 34 |
| BstF5I | GGATG | 5 cut(s) | 211, 331, 553, 628, 816 |
| BstFNI | CGCG | 1 cut(s) | 113 |
| BstHHI | GCGC | 2 cut(s) | 113, 235 |
| BstKTI | GATC | 6 cut(s) | 157, 168, 269, 369, 541, 595 |
| BstMAI | GTCTC | 2 cut(s) | 203, 231 |
| BstMBI | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| BstNI | CCWGG | 3 cut(s) | 54, 152, 203 |
| BstSCI | CCNGG | 4 cut(s) | 52, 150, 168, 201 |
| BstUI | CGCG | 1 cut(s) | 113 |
| BstV1I | GCAGC | 1 cut(s) | 286 |
| BstV2I | GAAGAC | 1 cut(s) | 419 |
| BstX2I | RGATCY | 3 cut(s) | 154, 366, 538 |
| BstYI | RGATCY | 3 cut(s) | 154, 366, 538 |
| Bsu15I | ATCGAT | 1 cut(s) | 281 |
| BsuRI | GGCC | 4 cut(s) | 39, 150, 459, 754 |
| BsuTUI | ATCGAT | 1 cut(s) | 281 |
| BtgI | CCRYGG | 1 cut(s) | 34 |
| BtsCI | GGATG | 5 cut(s) | 211, 331, 553, 628, 816 |
| BtsIMutI | CAGTG | 1 cut(s) | 402 |
| BveI | ACCTGC | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 3 cut(s) | 24, 441, 513 |
| CfoI | GCGC | 2 cut(s) | 113, 235 |
| Cfr10I | RCCGGY | 1 cut(s) | 439 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 457 |
| ClaI | ATCGAT | 1 cut(s) | 281 |
| Csp6I | GTAC | 3 cut(s) | 91, 261, 445 |
| CviAII | CATG | 1 cut(s) | 35 |
| CviQI | GTAC | 3 cut(s) | 91, 261, 445 |
| DdeI | CTNAG | 4 cut(s) | 137, 516, 756, 834 |
| DpnI | GATC | 6 cut(s) | 156, 167, 268, 368, 540, 594 |
| DpnII | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| EaeI | YGGCCR | 1 cut(s) | 37 |
| Eam1104I | CTCTTC | 4 cut(s) | 466, 515, 575, 644 |
| EarI | CTCTTC | 4 cut(s) | 466, 515, 575, 644 |
| Ecl136II | GAGCTC | 2 cut(s) | 22, 136 |
| Eco130I | CCWWGG | 1 cut(s) | 34 |
| Eco147I | AGGCCT | 1 cut(s) | 150 |
| Eco24I | GRGCYC | 2 cut(s) | 24, 138 |
| Eco31I | GGTCTC | 1 cut(s) | 203 |
| Eco47I | GGWCC | 1 cut(s) | 115 |
| Eco53kI | GAGCTC | 2 cut(s) | 22, 136 |
| Eco57I | CTGAAG | 1 cut(s) | 149 |
| EcoICRI | GAGCTC | 2 cut(s) | 22, 136 |
| EcoRI | GAATTC | 1 cut(s) | 490 |
| EcoRII | CCWGG | 3 cut(s) | 52, 150, 201 |
| EcoT14I | CCWWGG | 1 cut(s) | 34 |
| EcoT38I | GRGCYC | 2 cut(s) | 24, 138 |
| ErhI | CCWWGG | 1 cut(s) | 34 |
| FaeI | CATG | 1 cut(s) | 38 |
| FaiI | YATR | 4 cut(s) | 36, 372, 420, 798 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 512, 544 |
| FaqI | GGGAC | 2 cut(s) | 101, 547 |
| FatI | CATG | 1 cut(s) | 34 |
| Fnu4HI | GCNGC | 1 cut(s) | 300 |
| FokI | GGATG | 5 cut(s) | 218, 338, 560, 635, 823 |
| FriOI | GRGCYC | 2 cut(s) | 24, 138 |
| Fsp4HI | GCNGC | 1 cut(s) | 300 |
| FspBI | CTAG | 1 cut(s) | 696 |
| GlaI | GCGC | 2 cut(s) | 112, 234 |
| GluI | GCNGC | 1 cut(s) | 300 |
| GsaI | CCCAGC | 1 cut(s) | 730 |
| HaeIII | GGCC | 4 cut(s) | 39, 150, 459, 754 |
| HapII | CCGG | 4 cut(s) | 170, 264, 440, 677 |
| HhaI | GCGC | 2 cut(s) | 113, 235 |
| Hin1II | CATG | 1 cut(s) | 38 |
| Hin6I | GCGC | 2 cut(s) | 111, 233 |
| HinP1I | GCGC | 2 cut(s) | 111, 233 |
| HincII | GTYRAC | 1 cut(s) | 709 |
| HindII | GTYRAC | 1 cut(s) | 709 |
| HinfI | GANTC | 6 cut(s) | 160, 272, 415, 497, 733, 841 |
| HpaII | CCGG | 4 cut(s) | 170, 264, 440, 677 |
| HphI | GGTGA | 2 cut(s) | 355, 611 |
| Hpy166II | GTNNAC | 2 cut(s) | 261, 709 |
| Hpy188I | TCNGA | 8 cut(s) | 140, 159, 165, 271, 496, 622, 765, 852 |
| Hpy188III | TCNNGA | 4 cut(s) | 72, 244, 590, 858 |
| Hpy8I | GTNNAC | 2 cut(s) | 261, 709 |
| HpyAV | CCTTC | 6 cut(s) | 94, 124, 140, 631, 694, 772 |
| HpyCH4IV | ACGT | 1 cut(s) | 89 |
| HpyCH4V | TGCA | 3 cut(s) | 180, 329, 615 |
| HpyF3I | CTNAG | 4 cut(s) | 137, 516, 756, 834 |
| HpySE526I | ACGT | 1 cut(s) | 89 |
| Hsp92II | CATG | 1 cut(s) | 38 |
| HspAI | GCGC | 2 cut(s) | 111, 233 |
| KroI | GCCGGC | 1 cut(s) | 439 |
| KroNI | GCCGGC | 1 cut(s) | 441 |
| Kzo9I | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| LguI | GCTCTTC | 1 cut(s) | 644 |
| LmnI | GCTCC | 5 cut(s) | 133, 508, 525, 564, 781 |
| Lsp1109I | GCAGC | 1 cut(s) | 286 |
| LweI | GCATC | 2 cut(s) | 316, 538 |
| MaeI | CTAG | 1 cut(s) | 696 |
| MaeII | ACGT | 1 cut(s) | 89 |
| MalI | GATC | 6 cut(s) | 156, 167, 268, 368, 540, 594 |
| MboI | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| MboII | GAAGA | 8 cut(s) | 155, 367, 424, 483, 532, 592, 661, 850 |
| MflI | RGATCY | 3 cut(s) | 154, 366, 538 |
| MhlI | GDGCHC | 2 cut(s) | 24, 138 |
| MlsI | TGGCCA | 1 cut(s) | 39 |
| MluCI | AATT | 8 cut(s) | 238, 305, 400, 484, 490, 502, 616, 846 |
| MluNI | TGGCCA | 1 cut(s) | 39 |
| MlyI | GAGTC | 4 cut(s) | 154, 409, 506, 742 |
| MnlI | CCTC | 9 cut(s) | 56, 210, 342, 354, 357, 516, 555, 595, 765 |
| Mox20I | TGGCCA | 1 cut(s) | 39 |
| MroNI | GCCGGC | 1 cut(s) | 439 |
| MroXI | GAANNNNTTC | 2 cut(s) | 104, 251 |
| MscI | TGGCCA | 1 cut(s) | 39 |
| MslI | CAYNNNNRTG | 1 cut(s) | 677 |
| Msp20I | TGGCCA | 1 cut(s) | 39 |
| MspI | CCGG | 4 cut(s) | 170, 264, 440, 677 |
| MspR9I | CCNGG | 4 cut(s) | 54, 152, 170, 203 |
| MvaI | CCWGG | 3 cut(s) | 54, 152, 203 |
| MvnI | CGCG | 1 cut(s) | 113 |
| NaeI | GCCGGC | 1 cut(s) | 441 |
| NciI | CCSGG | 1 cut(s) | 170 |
| NcoI | CCATGG | 1 cut(s) | 34 |
| NdeII | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| NgoMIV | GCCGGC | 1 cut(s) | 439 |
| NlaIII | CATG | 1 cut(s) | 38 |
| NlaIV | GGNNCC | 2 cut(s) | 117, 687 |
| NspV | TTCGAA | 1 cut(s) | 647 |
| OliI | CACNNNNGTG | 1 cut(s) | 677 |
| PceI | AGGCCT | 1 cut(s) | 150 |
| PciSI | GCTCTTC | 1 cut(s) | 644 |
| PdiI | GCCGGC | 1 cut(s) | 441 |
| PdmI | GAANNNNTTC | 2 cut(s) | 104, 251 |
| PfeI | GAWTC | 2 cut(s) | 272, 841 |
| PkrI | GCNGC | 1 cut(s) | 301 |
| PleI | GAGTC | 4 cut(s) | 154, 409, 505, 741 |
| PpsI | GAGTC | 4 cut(s) | 154, 409, 505, 741 |
| Ppu21I | YACGTR | 1 cut(s) | 90 |
| Psp124BI | GAGCTC | 2 cut(s) | 24, 138 |
| Psp6I | CCWGG | 3 cut(s) | 52, 150, 201 |
| PspFI | CCCAGC | 1 cut(s) | 726 |
| PspGI | CCWGG | 3 cut(s) | 52, 150, 201 |
| PspN4I | GGNNCC | 2 cut(s) | 117, 687 |
| PspPI | GGNCC | 2 cut(s) | 115, 457 |
| PsuI | RGATCY | 3 cut(s) | 154, 366, 538 |
| RsaI | GTAC | 3 cut(s) | 92, 262, 446 |
| RsaNI | GTAC | 3 cut(s) | 91, 261, 445 |
| RseI | CAYNNNNRTG | 1 cut(s) | 677 |
| SacI | GAGCTC | 2 cut(s) | 24, 138 |
| SapI | GCTCTTC | 1 cut(s) | 644 |
| SatI | GCNGC | 1 cut(s) | 300 |
| Sau3AI | GATC | 6 cut(s) | 154, 165, 266, 366, 538, 592 |
| Sau96I | GGNCC | 2 cut(s) | 115, 457 |
| SchI | GAGTC | 4 cut(s) | 154, 409, 506, 742 |
| ScrFI | CCNGG | 4 cut(s) | 54, 152, 170, 203 |
| SduI | GDGCHC | 2 cut(s) | 24, 138 |
| SfaNI | GCATC | 2 cut(s) | 316, 538 |
| SfuI | TTCGAA | 1 cut(s) | 647 |
| SinI | GGWCC | 1 cut(s) | 115 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 677 |
| SmlI | CTYRAG | 1 cut(s) | 825 |
| SmoI | CTYRAG | 1 cut(s) | 825 |
| Sse9I | AATT | 8 cut(s) | 238, 305, 400, 484, 490, 502, 616, 846 |
| SseBI | AGGCCT | 1 cut(s) | 150 |
| SsiI | CCGC | 1 cut(s) | 113 |
| SspMI | CTAG | 1 cut(s) | 696 |
| SstI | GAGCTC | 2 cut(s) | 24, 138 |
| StuI | AGGCCT | 1 cut(s) | 150 |
| StyD4I | CCNGG | 4 cut(s) | 52, 150, 168, 201 |
| StyI | CCWWGG | 1 cut(s) | 34 |
| TaiI | ACGT | 1 cut(s) | 92 |
| TaqI | TCGA | 3 cut(s) | 281, 500, 647 |
| TasI | AATT | 8 cut(s) | 238, 305, 400, 484, 490, 502, 616, 846 |
| TfiI | GAWTC | 2 cut(s) | 272, 841 |
| TscAI | CASTG | 1 cut(s) | 402 |
| TseI | GCWGC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 2 cut(s) | 309, 791 |
| TspRI | CASTG | 1 cut(s) | 402 |
| VpaK11BI | GGWCC | 1 cut(s) | 115 |
| XapI | RAATTY | 5 cut(s) | 238, 400, 484, 490, 502 |
| XmnI | GAANNNNTTC | 2 cut(s) | 104, 251 |
| XspI | CTAG | 1 cut(s) | 696 |