RchiOBHm_Chr2g0100091

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
12111818 .. 12112678
861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47477

Sequence Viewer

Length: 861 bp
ATGGATTTGTGGATTTGTGAGCTCGCTCTAAACCATGGCCACTTCCTCCTACCAGGAAACCCCCAGACTTCAAGAAAGTCCAAGAACACGTACTTGTGGAAGGGTTTCGGCGCGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCGACCTGCAATAACAACAACAACAATCCCCTGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCAGAATTTCGTGAAGCTGTTCGTGTGTACCGGATCGGAATCAAAATCGATTTCTGTTGATGAAGCTGCGAAATTACTGCTTGGAGTAAGGGATGCACAGAATGTATCGGTGATGAGGACGAAGATGAGGAGGATCTATGACATTGCGAATGTGTTGTCGTCAGTGAATTTGATTGAGAAGACTCATACGGCAGATACAGGGAAGCCGGCGTACAGGTGGTTGGGCCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGTCGAATTTGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTAATGGATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCTGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTTCTTTCACTCCGGTGGTGGTTCCAAGAGCTAGGAAGGGTGTTGACATCAATAAGGTTTGCTGGGAGAGTCTTGGGGCTTATTATCGGCCTCAGTATCAGAACCAAGCAATGAAGGAGCTGTTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTAAGAAGAATCCAATTCAGAGTTCTTGA

Protein Analysis

286

Amino Acids

32.17

Weight (kDa)

9.27

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 76 - 153 4e-15 E2F/DP family winged-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 113
AclWI GGATC 4 cut(s) 160, 162, 274, 374
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 5 cut(s) 238, 400, 484, 490, 502
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 3 cut(s) 92, 262, 446
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 4 cut(s) 72, 484, 490, 590
AjnI CCWGG 3 cut(s) 52, 150, 201
AjuI GAANNNNNNNTTGG 1 cut(s) 838
AleI CACNNNNGTG 1 cut(s) 677
AluBI AGCT 8 cut(s) 22, 136, 250, 299, 528, 654, 695, 784
AluI AGCT 8 cut(s) 22, 136, 250, 299, 528, 654, 695, 784
Alw21I GWGCWC 2 cut(s) 24, 138
Alw26I GTCTC 2 cut(s) 203, 231
AlwI GGATC 4 cut(s) 160, 162, 274, 374
AoxI GGCC 4 cut(s) 37, 148, 457, 752
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 5 cut(s) 238, 400, 484, 490, 502
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
Asp700I GAANNNNTTC 2 cut(s) 104, 251
AspLEI GCGC 2 cut(s) 113, 235
AspS9I GGNCC 2 cut(s) 115, 457
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 355, 611
AsuII TTCGAA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 39
BanII GRGCYC 2 cut(s) 24, 138
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 24, 138
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 470, 617
BceAI ACGGC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 3 cut(s) 54, 152, 203
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 203, 231
BfaI CTAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 185
BglII AGATCT 1 cut(s) 538
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 54, 152, 170, 203
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 457
BmiI GGNNCC 2 cut(s) 117, 687
BmrFI CCNGG 4 cut(s) 54, 152, 170, 203
BmsI GCATC 2 cut(s) 316, 538
BpiI GAAGAC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 34, 201
BsaWI WCCGGW 2 cut(s) 263, 676
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 658
Bse3DI GCAATG 2 cut(s) 375, 780
Bse8I GATNNNNATC 1 cut(s) 271
BseBI CCWGG 3 cut(s) 54, 152, 203
BseCI ATCGAT 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 34, 201
BseGI GGATG 5 cut(s) 211, 331, 553, 628, 816
BseJI GATNNNNATC 1 cut(s) 271
BseMI GCAATG 2 cut(s) 375, 780
BseMII CTCAG 2 cut(s) 151, 770
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 3 cut(s) 376, 538, 577
BseXI GCAGC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 39, 150, 459, 754
BshVI ATCGAT 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 24, 138
BsiSI CCGG 4 cut(s) 170, 264, 440, 677
BslFI GGGAC 2 cut(s) 101, 547
BsmAI GTCTC 2 cut(s) 203, 231
BsmFI GGGAC 2 cut(s) 101, 547
BsnI GGCC 4 cut(s) 39, 150, 459, 754
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 2 cut(s) 24, 138
Bsp143I GATC 6 cut(s) 154, 165, 266, 366, 538, 592
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 1 cut(s) 113
BspANI GGCC 4 cut(s) 39, 150, 459, 754
BspCNI CTCAG 2 cut(s) 150, 769
BspDI ATCGAT 1 cut(s) 281
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 117, 687
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 4 cut(s) 160, 162, 274, 374
BspQI GCTCTTC 1 cut(s) 644
BspT104I TTCGAA 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 375, 780
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 658
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 34, 201
BssMI GATC 6 cut(s) 154, 165, 266, 366, 538, 592
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 3 cut(s) 54, 152, 203
Bst6I CTCTTC 4 cut(s) 466, 515, 575, 644
BstBAI YACGTR 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 3 cut(s) 24, 441, 513
BstDEI CTNAG 4 cut(s) 137, 516, 756, 834
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 5 cut(s) 211, 331, 553, 628, 816
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 235
BstKTI GATC 6 cut(s) 157, 168, 269, 369, 541, 595
BstMAI GTCTC 2 cut(s) 203, 231
BstMBI GATC 6 cut(s) 154, 165, 266, 366, 538, 592
BstNI CCWGG 3 cut(s) 54, 152, 203
BstSCI CCNGG 4 cut(s) 52, 150, 168, 201
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 3 cut(s) 154, 366, 538
BstYI RGATCY 3 cut(s) 154, 366, 538
Bsu15I ATCGAT 1 cut(s) 281
BsuRI GGCC 4 cut(s) 39, 150, 459, 754
BsuTUI ATCGAT 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 5 cut(s) 211, 331, 553, 628, 816
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 24, 441, 513
CfoI GCGC 2 cut(s) 113, 235
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 115, 457
ClaI ATCGAT 1 cut(s) 281
Csp6I GTAC 3 cut(s) 91, 261, 445
CviAII CATG 1 cut(s) 35
CviQI GTAC 3 cut(s) 91, 261, 445
DdeI CTNAG 4 cut(s) 137, 516, 756, 834
DpnI GATC 6 cut(s) 156, 167, 268, 368, 540, 594
DpnII GATC 6 cut(s) 154, 165, 266, 366, 538, 592
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 4 cut(s) 466, 515, 575, 644
EarI CTCTTC 4 cut(s) 466, 515, 575, 644
Ecl136II GAGCTC 2 cut(s) 22, 136
Eco130I CCWWGG 1 cut(s) 34
Eco147I AGGCCT 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 24, 138
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 22, 136
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 2 cut(s) 22, 136
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 3 cut(s) 52, 150, 201
EcoT14I CCWWGG 1 cut(s) 34
EcoT38I GRGCYC 2 cut(s) 24, 138
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 372, 420, 798
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 2 cut(s) 101, 547
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 5 cut(s) 218, 338, 560, 635, 823
FriOI GRGCYC 2 cut(s) 24, 138
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 696
GlaI GCGC 2 cut(s) 112, 234
GluI GCNGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 730
HaeIII GGCC 4 cut(s) 39, 150, 459, 754
HapII CCGG 4 cut(s) 170, 264, 440, 677
HhaI GCGC 2 cut(s) 113, 235
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 2 cut(s) 111, 233
HinP1I GCGC 2 cut(s) 111, 233
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 6 cut(s) 160, 272, 415, 497, 733, 841
HpaII CCGG 4 cut(s) 170, 264, 440, 677
HphI GGTGA 2 cut(s) 355, 611
Hpy166II GTNNAC 2 cut(s) 261, 709
Hpy188I TCNGA 8 cut(s) 140, 159, 165, 271, 496, 622, 765, 852
Hpy188III TCNNGA 4 cut(s) 72, 244, 590, 858
Hpy8I GTNNAC 2 cut(s) 261, 709
HpyAV CCTTC 6 cut(s) 94, 124, 140, 631, 694, 772
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 180, 329, 615
HpyF3I CTNAG 4 cut(s) 137, 516, 756, 834
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 2 cut(s) 111, 233
KroI GCCGGC 1 cut(s) 439
KroNI GCCGGC 1 cut(s) 441
Kzo9I GATC 6 cut(s) 154, 165, 266, 366, 538, 592
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 5 cut(s) 133, 508, 525, 564, 781
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 316, 538
MaeI CTAG 1 cut(s) 696
MaeII ACGT 1 cut(s) 89
MalI GATC 6 cut(s) 156, 167, 268, 368, 540, 594
MboI GATC 6 cut(s) 154, 165, 266, 366, 538, 592
MboII GAAGA 8 cut(s) 155, 367, 424, 483, 532, 592, 661, 850
MflI RGATCY 3 cut(s) 154, 366, 538
MhlI GDGCHC 2 cut(s) 24, 138
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 8 cut(s) 238, 305, 400, 484, 490, 502, 616, 846
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 4 cut(s) 154, 409, 506, 742
MnlI CCTC 9 cut(s) 56, 210, 342, 354, 357, 516, 555, 595, 765
Mox20I TGGCCA 1 cut(s) 39
MroNI GCCGGC 1 cut(s) 439
MroXI GAANNNNTTC 2 cut(s) 104, 251
MscI TGGCCA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 677
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 4 cut(s) 170, 264, 440, 677
MspR9I CCNGG 4 cut(s) 54, 152, 170, 203
MvaI CCWGG 3 cut(s) 54, 152, 203
MvnI CGCG 1 cut(s) 113
NaeI GCCGGC 1 cut(s) 441
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 34
NdeII GATC 6 cut(s) 154, 165, 266, 366, 538, 592
NgoMIV GCCGGC 1 cut(s) 439
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 2 cut(s) 117, 687
NspV TTCGAA 1 cut(s) 647
OliI CACNNNNGTG 1 cut(s) 677
PceI AGGCCT 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 644
PdiI GCCGGC 1 cut(s) 441
PdmI GAANNNNTTC 2 cut(s) 104, 251
PfeI GAWTC 2 cut(s) 272, 841
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 4 cut(s) 154, 409, 505, 741
PpsI GAGTC 4 cut(s) 154, 409, 505, 741
Ppu21I YACGTR 1 cut(s) 90
Psp124BI GAGCTC 2 cut(s) 24, 138
Psp6I CCWGG 3 cut(s) 52, 150, 201
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 3 cut(s) 52, 150, 201
PspN4I GGNNCC 2 cut(s) 117, 687
PspPI GGNCC 2 cut(s) 115, 457
PsuI RGATCY 3 cut(s) 154, 366, 538
RsaI GTAC 3 cut(s) 92, 262, 446
RsaNI GTAC 3 cut(s) 91, 261, 445
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 2 cut(s) 24, 138
SapI GCTCTTC 1 cut(s) 644
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 6 cut(s) 154, 165, 266, 366, 538, 592
Sau96I GGNCC 2 cut(s) 115, 457
SchI GAGTC 4 cut(s) 154, 409, 506, 742
ScrFI CCNGG 4 cut(s) 54, 152, 170, 203
SduI GDGCHC 2 cut(s) 24, 138
SfaNI GCATC 2 cut(s) 316, 538
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 825
SmoI CTYRAG 1 cut(s) 825
Sse9I AATT 8 cut(s) 238, 305, 400, 484, 490, 502, 616, 846
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 696
SstI GAGCTC 2 cut(s) 24, 138
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 52, 150, 168, 201
StyI CCWWGG 1 cut(s) 34
TaiI ACGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 281, 500, 647
TasI AATT 8 cut(s) 238, 305, 400, 484, 490, 502, 616, 846
TfiI GAWTC 2 cut(s) 272, 841
TscAI CASTG 1 cut(s) 402
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 309, 791
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 5 cut(s) 238, 400, 484, 490, 502
XmnI GAANNNNTTC 2 cut(s) 104, 251
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.