Rroxscaffold_5G00350580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000573
Physical Location & Seq
Reverse (-)
24797905 .. 24798417
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350580.1

Sequence Viewer

Length: 513 bp
ATGGATCCGATGAATGCAAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGGGAGTTCAAGATCAAGGTGAGGTTGGGAACCGCAATTCGAATGGTCGTGGGGCGAAGGAGAGTTCGAAGAGCGGCCAGTTTGGTCCTTTCGCTCCGATGGTAGTTCCAAGAGCTAGGAAAGGTGTTGACATCAACAAGGTTGCTGGGAGAGTCTTGGACTCTTGGGGCTTATTATTGGCCTCGGCATCGAACCGCCAAGGGAAAAAGAAGAGTTCCGGAAACATCATGCCACAGCCATTACCGTGCCTGGTCCCGAAGTTGACCGATTGGCTTCAATGGATGGAAAATAGGTGCTGCCATTTGTTGGAAAAAAAAATTAAGATGCCACTTTTAAGGACAGCAATGTATGCTAAAGGTAATGAAGCTTCGAGGTCCCAACAAGACAAGGATTCTCACGGGGTCACCTTCCTTGTTGGGTGGTGTGTTCGAAGTTTTGGAGAAAGGAATGGCCATTTGTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.76

Weight (kDa)

10.07

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 352
AccBSI CCGCTC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 263
AciI CCGC 3 cut(s) 79, 120, 241
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 121, 496
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 56, 323
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 161, 413
AluI AGCT 2 cut(s) 161, 413
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 263
AoxI GGCC 3 cut(s) 121, 225, 496
ApeKI GCWGC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 131, 298, 420
AsuHPI GGTGA 2 cut(s) 77, 442
AsuII TTCGAA 3 cut(s) 86, 113, 475
AvaII GGWCC 3 cut(s) 131, 298, 420
BalI TGGCCA 1 cut(s) 498
BamHI GGATCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 397, 429
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 139, 322
BciT130I CCWGG 1 cut(s) 296
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 121, 343
BlsI GCNGC 2 cut(s) 122, 344
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 3 cut(s) 131, 298, 420
BmgT120I GGNCC 3 cut(s) 131, 298, 420
BmiI GGNNCC 4 cut(s) 6, 77, 300, 422
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 242, 360
Bpu14I TTCGAA 3 cut(s) 86, 113, 475
BsaJI CCNNGG 2 cut(s) 228, 244
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 263
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 228, 244
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 191
BshFI GGCC 3 cut(s) 123, 227, 498
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 2 cut(s) 284, 406
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 2 cut(s) 284, 406
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 3 cut(s) 123, 227, 498
Bsp119I TTCGAA 3 cut(s) 86, 113, 475
Bsp13I TCCGGA 1 cut(s) 263
Bsp143I GATC 2 cut(s) 4, 58
BspACI CCGC 3 cut(s) 79, 120, 241
BspANI GGCC 3 cut(s) 123, 227, 498
BspEI TCCGGA 1 cut(s) 263
BspLI GGNNCC 4 cut(s) 6, 77, 300, 422
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 110
BspT104I TTCGAA 3 cut(s) 86, 113, 475
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 228, 244
BssMI GATC 2 cut(s) 4, 58
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 110, 251
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBI TTCGAA 3 cut(s) 86, 113, 475
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 2 cut(s) 7, 61
BstMBI GATC 2 cut(s) 4, 58
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 296
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 123, 227, 498
BtsCI GGATG 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 131, 298, 420
CviAII CATG 1 cut(s) 274
CviJI RGCY 8 cut(s) 123, 161, 216, 227, 283, 319, 413, 498
CviKI_1 RGCY 8 cut(s) 123, 161, 216, 227, 283, 319, 413, 498
DpnI GATC 2 cut(s) 6, 60
DpnII GATC 2 cut(s) 4, 58
EaeI YGGCCR 2 cut(s) 121, 496
Eam1104I CTCTTC 2 cut(s) 110, 251
EarI CTCTTC 2 cut(s) 110, 251
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 131, 298, 420
Eco91I GGTNACC 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 277
FaiI YATR 2 cut(s) 275, 396
FaqI GGGAC 2 cut(s) 284, 406
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 121, 343
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 121, 343
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 121, 343
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 3 cut(s) 123, 227, 498
HapII CCGG 1 cut(s) 264
Hin1II CATG 1 cut(s) 277
HincII GTYRAC 2 cut(s) 175, 309
HindII GTYRAC 2 cut(s) 175, 309
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 198, 206, 437
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 77, 442
Hpy166II GTNNAC 2 cut(s) 175, 309
Hpy188I TCNGA 2 cut(s) 9, 144
Hpy188III TCNNGA 3 cut(s) 56, 264, 301
Hpy8I GTNNAC 2 cut(s) 175, 309
HpyAV CCTTC 3 cut(s) 40, 97, 463
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
Hsp92II CATG 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 263
Kzo9I GATC 2 cut(s) 4, 58
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 30, 145
LpnPI CCDG 5 cut(s) 137, 177, 277, 281, 308
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 242, 360
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 6, 60
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 4, 58
MboII GAAGA 2 cut(s) 127, 268
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 2 cut(s) 82, 363
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 2 cut(s) 200, 207
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 21, 61, 238, 411
Mox20I TGGCCA 1 cut(s) 498
MroI TCCGGA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 498
MseI TTAA 2 cut(s) 366, 380
MslI CAYNNNNRTG 1 cut(s) 289
Msp20I TGGCCA 1 cut(s) 498
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 19
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 2 cut(s) 4, 58
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 4 cut(s) 6, 77, 300, 422
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 448
NspV TTCGAA 3 cut(s) 86, 113, 475
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 2 cut(s) 122, 344
PleI GAGTC 2 cut(s) 200, 206
PpsI GAGTC 2 cut(s) 200, 206
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 4 cut(s) 6, 77, 300, 422
PspPI GGNCC 3 cut(s) 131, 298, 420
PspPPI RGGWCCY 1 cut(s) 420
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 366, 380
SatI GCNGC 2 cut(s) 121, 343
Sau3AI GATC 2 cut(s) 4, 58
Sau96I GGNCC 3 cut(s) 131, 298, 420
SchI GAGTC 2 cut(s) 200, 207
ScrFI CCNGG 1 cut(s) 296
SfaNI GCATC 2 cut(s) 242, 360
SfuI TTCGAA 3 cut(s) 86, 113, 475
SinI GGWCC 3 cut(s) 131, 298, 420
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse9I AATT 2 cut(s) 82, 363
SsiI CCGC 3 cut(s) 79, 120, 241
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 5 cut(s) 86, 113, 236, 416, 475
TaqII GACCGA 1 cut(s) 326
TasI AATT 2 cut(s) 82, 363
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 2 cut(s) 366, 380
Tru9I TTAA 2 cut(s) 366, 380
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 26, 423
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 3 cut(s) 131, 298, 420
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.