Rroxscaffold_5G00366890

GTP-binding protein TypA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000573
Physical Location & Seq
Forward (+)
48848607 .. 48854249
5643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366890.1

Sequence Viewer

Length: 372 bp
ATGGTGGAGGGAACAGTTTTGGTTGTTGATGCGGGGAAGGTTCGCTTGCACGACCAAGTTGTGCTTGCCAAAGCCTTAAGATACCGGCTGCGTCCTATCCTCCTTCTAAAAAAGTTGATCACCTGCAGTTTTGAAGAGATGTGCGATGAAGATAAGAGTCGAGTATTTGATCCTTCGCAAATCTCGGTGCTACGGAGGAGCAATGGATTTTCTTCCATATATTCAGCATTTACCACTGCTCCTTCTAACTTTGGGGATTCCATTTTCTTCCTCATATTGTCAAAAGACGCAATTAGGTCTTCAAGCACATTCTCTGCTATAAGCACCCAAGGACTCTTGGCAAGTCTCATTTCACTTCACTACCTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

9.34

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 131
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 164
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 134, 303
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 75
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmsI GCATC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse118I RCCGGY 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 117, 169
BspACI CCGC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 128
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 117, 169
BssT1I CCWWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 47, 66
BstKTI GATC 2 cut(s) 120, 172
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 117, 169
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 47, 66
Cfr10I RCCGGY 1 cut(s) 84
CseI GACGC 2 cut(s) 80, 296
CviJI RGCY 2 cut(s) 74, 88
CviKI_1 RGCY 2 cut(s) 74, 88
DpnI GATC 2 cut(s) 119, 171
DpnII GATC 2 cut(s) 117, 169
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaiI YATR 4 cut(s) 218, 220, 275, 320
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 48, 80
FauI CCCGC 1 cut(s) 25
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HapII CCGG 1 cut(s) 85
HgaI GACGC 2 cut(s) 80, 296
HinfI GANTC 3 cut(s) 157, 257, 333
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 112
HpyAV CCTTC 4 cut(s) 31, 113, 183, 252
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 49, 126
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 117, 169
LmnI GCTCC 2 cut(s) 198, 244
LpnPI CCDG 2 cut(s) 98, 136
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 19
MalI GATC 2 cut(s) 119, 171
MboI GATC 2 cut(s) 117, 169
MboII GAAGA 5 cut(s) 146, 161, 204, 259, 291
MluCI AATT 1 cut(s) 291
MlyI GAGTC 2 cut(s) 166, 327
MnlI CCTC 3 cut(s) 110, 189, 281
MseI TTAA 1 cut(s) 77
MspCI CTTAAG 1 cut(s) 76
MspI CCGG 1 cut(s) 85
NdeII GATC 2 cut(s) 117, 169
PaqCI CACCTGC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 2 cut(s) 165, 327
PpsI GAGTC 2 cut(s) 165, 327
PstI CTGCAG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 117, 169
SchI GAGTC 2 cut(s) 166, 327
SetI ASST 4 cut(s) 42, 125, 299, 366
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 32
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 160
TasI AATT 1 cut(s) 291
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 241
Vha464I CTTAAG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.