Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8405049.1

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

937 .. 1260

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8405049.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ctgacgaatgcgagtagtaagaggagcaaggttgtggagaagagagttcaagatcagggtgaggttgagaactgcaattcggatggcggtggtggggcgaaggagagttcgaagagctaccagtttggtcctttcgctccggtggtggttccaagagctaggaagggtgttgacgtcaacaaggtttgctgggagagtctgggggcttattatcggcctcagtatcagaaccaagcgatgaaggagctgttttcgcattatagggaagcgtggatgttgtggaactctcaagttgctgagaagaatccaattcagagttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

9.17

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AciI	CCGC	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	117, 158, 247
AluI	AGCT	3 cut(s)	117, 158, 247
AoxI	GGCC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	128
BccI	CCATC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	88, 279
BseMII	CTCAG	2 cut(s)	233, 288
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	217
Bsp119I	TTCGAA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	232, 289
BspLI	GGNNCC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	174
Bst6I	CTCTTC	2 cut(s)	35, 107
BstACI	GRCGYC	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	219, 297
BstF5I	GGATG	2 cut(s)	88, 279
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	88, 279
Cfr13I	GGNCC	1 cut(s)	128
CviJI	RGCY	5 cut(s)	117, 158, 206, 217, 247
CviKI_1	RGCY	5 cut(s)	117, 158, 206, 217, 247
DdeI	CTNAG	2 cut(s)	219, 297
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	35, 107
EarI	CTCTTC	2 cut(s)	35, 107
Eco47I	GGWCC	1 cut(s)	128
FaiI	YATR	1 cut(s)	261
FokI	GGATG	2 cut(s)	95, 286
FspBI	CTAG	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	174
HincII	GTYRAC	2 cut(s)	172, 178
HindII	GTYRAC	2 cut(s)	172, 178
HinfI	GANTC	2 cut(s)	196, 304
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	172, 178
Hpy188I	TCNGA	3 cut(s)	82, 228, 315
Hpy188III	TCNNGA	2 cut(s)	50, 321
Hpy8I	GTNNAC	2 cut(s)	172, 178
HpyAV	CCTTC	3 cut(s)	94, 157, 235
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	219, 297
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	24, 142, 244
LpnPI	CCDG	5 cut(s)	41, 134, 153, 175, 185
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	52, 124, 313
MluCI	AATT	2 cut(s)	76, 309
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	15, 55, 228
MspI	CCGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	205
SetI	ASST	7 cut(s)	33, 66, 119, 160, 177, 186, 249
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	76, 309
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	76, 309
TfiI	GAWTC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	128
XspI	CTAG	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.