Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

32003575 .. 32004846

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCCTCCTCCGCGGCCGCCGTCGTCGATCGTCCTCCGGCCACCACCACCACCACCCGCCGTGACGCCTCCTACAGCCGAAAGCAGAAGTCCCTGAGCCTCCTCTGCTCCAATTTCCTCAGCCTCTACAACCGCGACGACGGCGCCACAGCCCTGATCGGCCTCGACGACGCAGCCTCCCGCCTCGGCGTCGTCCGCCGCCGGATCTACGACATCGTCAACGTGCTGGAGAGCGTCGGACTGCTGTCAAGAAAGTCCAAGAACACGTACACGTGGAAGGGTTTCGGCGCGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCGGCCTGCAATAACAACAACAACAACAATCCCCTGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCGCAGAATTTTGTGAAGCTGTTCGTGTGTACCGGATCGGAATCGGAATCGATTTCTCTTGATGAAGCTGCGAAATTACTGCTTGGAGTAGGGGATGCACAGAATGTATCGGTGATGAGGACGAAGGTGAGGAGGATCTATGACATTGCGAATGTGTTGTCGTCGGTGAATTTGATTGAGAAGACTCATACGGCGGATACAGGGAAGCCGGCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCCGAATTCGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCGGTGGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCCTTTCGCTCCGGTGGCGGTTTCCAGAGGGAAGCGTGGATGTTGTGGAACTCCCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGATGCTTCAAGATTTATGGTTGCTTTGTTTTGTGCAACTGATGTGTATTCTCTATACTTGTACTCTCAGCTTCCCTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

343

Amino Acids

37.41

Weight (kDa)

9.49

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	28 - 94	8.3e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	133 - 216	2.3e-18	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	3 cut(s)	14, 135, 290
AclWI	GGATC	5 cut(s)	212, 337, 339, 463, 563
AcoI	YGGCCR	2 cut(s)	15, 39
AcsI	RAATTY	5 cut(s)	427, 589, 673, 679, 691
AcuI	CTGAAG	1 cut(s)	326
AcvI	CACGTG	1 cut(s)	273
AcyI	GRCGYC	3 cut(s)	66, 144, 189
AfaI	GTAC	4 cut(s)	269, 451, 635, 1007
AflIII	ACRYGT	2 cut(s)	264, 270
AgsI	TTSAA	4 cut(s)	673, 679, 779, 954
AjnI	CCWGG	2 cut(s)	327, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	924, 956
AluBI	AGCT	6 cut(s)	313, 439, 488, 717, 846, 1015
AluI	AGCT	6 cut(s)	313, 439, 488, 717, 846, 1015
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	383, 411
AlwI	GGATC	5 cut(s)	212, 337, 339, 463, 563
AoxI	GGCC	5 cut(s)	15, 39, 160, 325, 351
ApeKI	GCWGC	2 cut(s)	173, 488
ApoI	RAATTY	5 cut(s)	427, 589, 673, 679, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	2 cut(s)	281, 440
AspLEI	GCGC	4 cut(s)	146, 290, 415, 424
AspS9I	GGNCC	2 cut(s)	292, 857
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	4 cut(s)	544, 559, 598, 800
AsuII	TTCGAA	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	292, 857
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BbrPI	CACGTG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	185, 475
BccI	CCATC	2 cut(s)	659, 806
BceAI	ACGGC	4 cut(s)	5, 45, 157, 627
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	2 cut(s)	329, 383
BciVI	GTATCC	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	383, 411
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	2 cut(s)	147, 416
BfuI	GTATCC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	6 cut(s)	15, 18, 174, 199, 351, 489
BlsI	GCNGC	6 cut(s)	16, 19, 175, 200, 352, 490
Bme1390I	CCNGG	3 cut(s)	329, 347, 383
Bme18I	GGWCC	2 cut(s)	292, 857
BmgT120I	GGNCC	2 cut(s)	292, 857
BmiI	GGNNCC	3 cut(s)	145, 294, 687
BmrFI	CCNGG	3 cut(s)	329, 347, 383
BmsI	GCATC	2 cut(s)	505, 937
BoxI	GACNNNNGTC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	95, 119
Bpu14I	TTCGAA	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	470
BsaAI	YACGTR	2 cut(s)	267, 273
BsaBI	GATNNNNATC	1 cut(s)	460
BsaHI	GRCGYC	3 cut(s)	66, 144, 189
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	12, 184, 381
BsaWI	WCCGGW	2 cut(s)	452, 868
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	564
Bse8I	GATNNNNATC	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	329, 383
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	3 cut(s)	12, 184, 381
BseGI	GGATG	4 cut(s)	391, 520, 817, 902
BseJI	GATNNNNATC	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	5 cut(s)	86, 133, 328, 911, 1025
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	4 cut(s)	92, 565, 727, 766
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	185, 475
Bsh1236I	CGCG	3 cut(s)	14, 135, 290
Bsh1285I	CGRYCG	2 cut(s)	18, 31
BshFI	GGCC	5 cut(s)	17, 41, 162, 327, 353
BshNI	GGYRCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	470
BsiEI	CGRYCG	2 cut(s)	18, 31
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	6 cut(s)	38, 202, 347, 453, 629, 869
BslFI	GGGAC	3 cut(s)	76, 278, 736
BsmAI	GTCTC	2 cut(s)	383, 411
BsmFI	GGGAC	3 cut(s)	76, 278, 736
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	5 cut(s)	17, 41, 162, 327, 353
Bso31I	GGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
BspANI	GGCC	5 cut(s)	17, 41, 162, 327, 353
BspCNI	CTCAG	5 cut(s)	87, 132, 327, 912, 1024
BspDI	ATCGAT	1 cut(s)	470
BspFNI	CGCG	3 cut(s)	14, 135, 290
BspLI	GGNNCC	3 cut(s)	145, 294, 687
BspPI	GGATC	5 cut(s)	212, 337, 339, 463, 563
BspQI	GCTCTTC	1 cut(s)	836
BspT104I	TTCGAA	1 cut(s)	839
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	850
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	3 cut(s)	12, 184, 381
BssMI	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
BssNI	GRCGYC	3 cut(s)	66, 144, 189
Bst2UI	CCWGG	2 cut(s)	329, 383
Bst6I	CTCTTC	4 cut(s)	655, 704, 764, 836
BstACI	GRCGYC	3 cut(s)	66, 144, 189
BstBAI	YACGTR	2 cut(s)	267, 273
BstBI	TTCGAA	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	355, 630, 702
BstDEI	CTNAG	6 cut(s)	95, 119, 314, 705, 920, 1011
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	391, 520, 817, 902
BstFNI	CGCG	3 cut(s)	14, 135, 290
BstH2I	RGCGCY	2 cut(s)	147, 416
BstHHI	GCGC	4 cut(s)	146, 290, 415, 424
BstKTI	GATC	9 cut(s)	31, 159, 207, 334, 345, 458, 558, 730, 784
BstMAI	GTCTC	2 cut(s)	383, 411
BstMBI	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
BstMCI	CGRYCG	2 cut(s)	18, 31
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 141, 195, 419, 421, 872
BstNI	CCWGG	2 cut(s)	329, 383
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	327, 345, 381
BstSFI	CTRYAG	1 cut(s)	73
BstUI	CGCG	3 cut(s)	14, 135, 290
BstV1I	GCAGC	2 cut(s)	185, 475
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	4 cut(s)	204, 331, 555, 727
BstYI	RGATCY	4 cut(s)	204, 331, 555, 727
BstZI	CGGCCG	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	5 cut(s)	17, 41, 162, 327, 353
BsuTUI	ATCGAT	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	391, 520, 817, 902
Cac8I	GCNNGC	3 cut(s)	355, 630, 702
CciNI	GCGGCCGC	1 cut(s)	15
CfoI	GCGC	4 cut(s)	146, 290, 415, 424
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	292, 857
Cfr42I	CCGCGG	1 cut(s)	15
ClaI	ATCGAT	1 cut(s)	470
CseI	GACGC	4 cut(s)	74, 178, 179, 223
Csp6I	GTAC	4 cut(s)	268, 450, 634, 1006
CviQI	GTAC	4 cut(s)	268, 450, 634, 1006
DdeI	CTNAG	6 cut(s)	95, 119, 314, 705, 920, 1011
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	9 cut(s)	30, 158, 206, 333, 344, 457, 557, 729, 783
DpnII	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
EaeI	YGGCCR	2 cut(s)	15, 39
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	4 cut(s)	655, 704, 764, 836
EarI	CTCTTC	4 cut(s)	655, 704, 764, 836
EciI	GGCGGA	2 cut(s)	185, 629
Ecl136II	GAGCTC	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	292, 857
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	313
EcoRI	GAATTC	2 cut(s)	679, 691
EcoRII	CCWGG	2 cut(s)	327, 381
EcoT38I	GRGCYC	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaiI	YATR	4 cut(s)	561, 609, 962, 1000
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	3 cut(s)	76, 278, 736
FauI	CCCGC	2 cut(s)	65, 188
Fnu4HI	GCNGC	6 cut(s)	15, 18, 174, 199, 351, 489
FokI	GGATG	4 cut(s)	398, 527, 824, 909
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	6 cut(s)	15, 18, 174, 199, 351, 489
GlaI	GCGC	4 cut(s)	145, 289, 414, 423
GluI	GCNGC	6 cut(s)	15, 18, 174, 199, 351, 489
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	2 cut(s)	147, 416
HaeIII	GGCC	5 cut(s)	17, 41, 162, 327, 353
HapII	CCGG	6 cut(s)	38, 202, 347, 453, 629, 869
HgaI	GACGC	4 cut(s)	74, 178, 179, 223
HhaI	GCGC	4 cut(s)	146, 290, 415, 424
Hin1I	GRCGYC	3 cut(s)	66, 144, 189
Hin6I	GCGC	4 cut(s)	144, 288, 413, 422
HinP1I	GCGC	4 cut(s)	144, 288, 413, 422
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	337, 461, 467, 604, 927
HpaII	CCGG	6 cut(s)	38, 202, 347, 453, 629, 869
HphI	GGTGA	4 cut(s)	544, 559, 598, 800
Hpy166II	GTNNAC	3 cut(s)	220, 270, 450
Hpy188III	TCNNGA	6 cut(s)	249, 479, 779, 882, 944, 954
Hpy8I	GTNNAC	3 cut(s)	220, 270, 450
Hpy99I	CGWCG	9 cut(s)	26, 29, 140, 143, 170, 173, 194, 239, 586
HpyAV	CCTTC	5 cut(s)	271, 301, 317, 538, 823
HpyCH4IV	ACGT	3 cut(s)	222, 266, 272
HpyCH4V	TGCA	4 cut(s)	357, 518, 804, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 141, 195, 419, 421, 872
HpyF3I	CTNAG	6 cut(s)	95, 119, 314, 705, 920, 1011
HpySE526I	ACGT	3 cut(s)	222, 266, 272
Hsp92I	GRCGYC	3 cut(s)	66, 144, 189
HspAI	GCGC	4 cut(s)	144, 288, 413, 422
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
LguI	GCTCTTC	1 cut(s)	836
LmnI	GCTCC	7 cut(s)	113, 310, 685, 697, 714, 753, 871
Lsp1109I	GCAGC	2 cut(s)	185, 475
LweI	GCATC	2 cut(s)	505, 937
MaeII	ACGT	3 cut(s)	222, 266, 272
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	9 cut(s)	30, 158, 206, 333, 344, 457, 557, 729, 783
MboI	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
MboII	GAAGA	7 cut(s)	332, 613, 672, 721, 781, 853, 936
MflI	RGATCY	4 cut(s)	204, 331, 555, 727
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	9 cut(s)	112, 427, 494, 589, 673, 679, 691, 805, 932
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	331, 598
MmeI	TCCRAC	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	628
MroXI	GAANNNNTTC	2 cut(s)	281, 440
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	6 cut(s)	38, 202, 347, 453, 629, 869
MspR9I	CCNGG	3 cut(s)	329, 347, 383
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	2 cut(s)	329, 383
MvnI	CGCG	3 cut(s)	14, 135, 290
MwoI	GCNNNNNNNGC	6 cut(s)	105, 141, 195, 419, 421, 872
NaeI	GCCGGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
NgoMIV	GCCGGC	1 cut(s)	628
NlaIV	GGNNCC	3 cut(s)	145, 294, 687
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	62
NotI	GCGGCCGC	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	839
PceI	AGGCCT	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	742
PdiI	GCCGGC	1 cut(s)	630
PdmI	GAANNNNTTC	2 cut(s)	281, 440
PfeI	GAWTC	3 cut(s)	461, 467, 927
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	6 cut(s)	16, 19, 175, 200, 352, 490
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	2 cut(s)	331, 598
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	331, 598
Ppu21I	YACGTR	2 cut(s)	267, 273
PshAI	GACNNNNGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	327, 381
PspCI	CACGTG	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	327, 381
PspN4I	GGNNCC	3 cut(s)	145, 294, 687
PspPI	GGNCC	2 cut(s)	292, 857
PsuI	RGATCY	4 cut(s)	204, 331, 555, 727
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	4 cut(s)	269, 451, 635, 1007
RsaNI	GTAC	4 cut(s)	268, 450, 634, 1006
SacI	GAGCTC	1 cut(s)	315
SacII	CCGCGG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	836
SatI	GCNGC	6 cut(s)	15, 18, 174, 199, 351, 489
Sau3AI	GATC	9 cut(s)	28, 156, 204, 331, 342, 455, 555, 727, 781
Sau96I	GGNCC	2 cut(s)	292, 857
SchI	GAGTC	2 cut(s)	331, 598
ScrFI	CCNGG	3 cut(s)	329, 347, 383
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	505, 937
SfcI	CTRYAG	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	839
SgrBI	CCGCGG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	292, 857
Sse9I	AATT	9 cut(s)	112, 427, 494, 589, 673, 679, 691, 805, 932
SseBI	AGGCCT	1 cut(s)	327
SspDI	GGCGCC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	327, 345, 381
TaiI	ACGT	3 cut(s)	225, 269, 275
TaqI	TCGA	4 cut(s)	27, 165, 470, 839
TasI	AATT	9 cut(s)	112, 427, 494, 589, 673, 679, 691, 805, 932
TatI	WGTACW	1 cut(s)	1005
TauI	GCSGC	4 cut(s)	17, 20, 201, 353
TfiI	GAWTC	3 cut(s)	461, 467, 927
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	173, 488
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	498
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	292, 857
XapI	RAATTY	5 cut(s)	427, 589, 673, 679, 691
XmnI	GAANNNNTTC	2 cut(s)	281, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.