Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

47336386 .. 47337222

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCACTTCCTCCTACCTGGAAACCCTCCAAACGTCAAGAAAGTCCAAGAACACGCACACGTGGAAGGGTTTCGGCGCGGTCCCTAACTCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCGGCCTGCAATAACAACAACAATAATCCCTTGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCGCAGAATTTTGTGAAGTTATTCGTGTGGGATGCACAGAATGTATCGGTGATGAGGACGAAGGTGAGGAGGATCTATGACACTGCGAATGTGTTGTTGTCGGTGAATTTGATTGAGAAGACTCATACGGCGGATACAGGGAAGTCGGCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCTGAGCCGAATTTGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATACGTGTAGTAAGAGGAGCAAGGTTATGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATTGTTGTGGGGCGAATTCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCTTTTCGCTCTGGTGGCGGTTCCAAGAGCTAGGAAGGGTGTTGACATCAACAAGATTTGTTGGGAGAGTCTTGGGGCTTATTATCGGCCTCAGTATCAGAACCAAGCGTTGAAGGAGCTGTTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

259

Amino Acids

29.33

Weight (kDa)

9.31

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	62 - 124	1.1e-11	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	80, 140, 338, 602
AclWI	GGATC	3 cut(s)	127, 129, 287
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	6 cut(s)	214, 313, 397, 403, 415, 550
AcuI	CTGAAG	1 cut(s)	116
AcvI	CACGTG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	359
AflIII	ACRYGT	2 cut(s)	60, 464
AgsI	TTSAA	4 cut(s)	397, 403, 503, 697
AjnI	CCWGG	2 cut(s)	18, 117
AjuI	GAANNNNNNNTTGG	1 cut(s)	757
AluBI	AGCT	5 cut(s)	103, 441, 573, 614, 703
AluI	AGCT	5 cut(s)	103, 441, 573, 614, 703
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	170, 198
AlwI	GGATC	3 cut(s)	127, 129, 287
AoxI	GGCC	4 cut(s)	3, 115, 141, 671
ApoI	RAATTY	6 cut(s)	214, 313, 397, 403, 415, 550
Asp700I	GAANNNNTTC	2 cut(s)	71, 227
AspLEI	GCGC	3 cut(s)	80, 202, 211
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	4 cut(s)	268, 283, 322, 524
AsuII	TTCGAA	2 cut(s)	554, 566
AvaII	GGWCC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbrPI	CACGTG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	20, 119
BciVI	GTATCC	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	170, 198
BfaI	CTAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	3 cut(s)	20, 119, 137
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 606
BmrFI	CCNGG	3 cut(s)	20, 119, 137
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	332
Bpu14I	TTCGAA	2 cut(s)	554, 566
BpuEI	CTTGAG	1 cut(s)	729
BpuMI	CCSGG	1 cut(s)	137
BsaAI	YACGTR	2 cut(s)	63, 465
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	20, 119
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	178, 244, 735
BseMII	CTCAG	4 cut(s)	118, 399, 689, 744
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	3 cut(s)	289, 451, 490
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	5, 117, 143, 673
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	68, 460
BsmAI	GTCTC	2 cut(s)	170, 198
BsmFI	GGGAC	2 cut(s)	68, 460
BsnI	GGCC	4 cut(s)	5, 117, 143, 673
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	2 cut(s)	554, 566
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	5 cut(s)	121, 132, 279, 451, 505
BspACI	CCGC	4 cut(s)	80, 140, 338, 602
BspANI	GGCC	4 cut(s)	5, 117, 143, 673
BspCNI	CTCAG	4 cut(s)	117, 400, 688, 745
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	84, 606
BspPI	GGATC	3 cut(s)	127, 129, 287
BspQI	GCTCTTC	1 cut(s)	563
BspT104I	TTCGAA	2 cut(s)	554, 566
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	121, 132, 279, 451, 505
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	20, 119
Bst6I	CTCTTC	4 cut(s)	379, 428, 488, 563
BstBAI	YACGTR	2 cut(s)	63, 465
BstBI	TTCGAA	2 cut(s)	554, 566
BstC8I	GCNNGC	2 cut(s)	145, 426
BstDEI	CTNAG	5 cut(s)	104, 408, 429, 675, 753
BstF5I	GGATG	3 cut(s)	178, 244, 735
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	3 cut(s)	80, 202, 211
BstKTI	GATC	5 cut(s)	124, 135, 282, 454, 508
BstMAI	GTCTC	2 cut(s)	170, 198
BstMBI	GATC	5 cut(s)	121, 132, 279, 451, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 208, 599
BstNI	CCWGG	2 cut(s)	20, 119
BstSCI	CCNGG	3 cut(s)	18, 117, 135
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	3 cut(s)	121, 279, 451
BstYI	RGATCY	3 cut(s)	121, 279, 451
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	4 cut(s)	5, 117, 143, 673
BtsCI	GGATG	3 cut(s)	178, 244, 735
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	145, 426
CfoI	GCGC	3 cut(s)	80, 202, 211
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	358
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	5 cut(s)	104, 408, 429, 675, 753
DpnI	GATC	5 cut(s)	123, 134, 281, 453, 507
DpnII	GATC	5 cut(s)	121, 132, 279, 451, 505
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	379, 428, 488, 563
EarI	CTCTTC	4 cut(s)	379, 428, 488, 563
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	116
Eco72I	CACGTG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	2 cut(s)	403, 550
EcoRII	CCWGG	2 cut(s)	18, 117
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	168
FaiI	YATR	4 cut(s)	285, 333, 488, 717
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	2 cut(s)	68, 460
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	3 cut(s)	185, 251, 742
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	3 cut(s)	79, 201, 210
GluI	GCNGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	5, 117, 143, 673
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	3 cut(s)	80, 202, 211
Hin6I	GCGC	3 cut(s)	78, 200, 209
HinP1I	GCGC	3 cut(s)	78, 200, 209
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	4 cut(s)	127, 328, 652, 760
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	4 cut(s)	268, 283, 322, 524
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	8 cut(s)	107, 126, 132, 409, 456, 535, 684, 771
Hpy188III	TCNNGA	3 cut(s)	39, 503, 777
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	7 cut(s)	61, 91, 107, 262, 550, 613, 691
HpyCH4IV	ACGT	3 cut(s)	35, 62, 464
HpyCH4V	TGCA	3 cut(s)	147, 242, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 208, 599
HpyF3I	CTNAG	5 cut(s)	104, 408, 429, 675, 753
HpySE526I	ACGT	3 cut(s)	35, 62, 464
HspAI	GCGC	3 cut(s)	78, 200, 209
Kzo9I	GATC	5 cut(s)	121, 132, 279, 451, 505
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	5 cut(s)	100, 421, 438, 477, 700
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	3 cut(s)	35, 62, 464
MalI	GATC	5 cut(s)	123, 134, 281, 453, 507
MboI	GATC	5 cut(s)	121, 132, 279, 451, 505
MboII	GAAGA	7 cut(s)	122, 337, 396, 445, 505, 580, 769
MflI	RGATCY	3 cut(s)	121, 279, 451
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	214, 313, 397, 403, 415, 529, 550, 765
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	121, 322, 661
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	71, 227
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	20, 119, 137
MvaI	CCWGG	2 cut(s)	20, 119
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	206, 208, 599
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	5 cut(s)	121, 132, 279, 451, 505
NlaIV	GGNNCC	2 cut(s)	84, 606
NspV	TTCGAA	2 cut(s)	554, 566
PceI	AGGCCT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	563
PdmI	GAANNNNTTC	2 cut(s)	71, 227
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	3 cut(s)	121, 322, 660
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
PpsI	GAGTC	3 cut(s)	121, 322, 660
Ppu21I	YACGTR	2 cut(s)	63, 465
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	18, 117
PspCI	CACGTG	1 cut(s)	63
PspGI	CCWGG	2 cut(s)	18, 117
PspN4I	GGNNCC	2 cut(s)	84, 606
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	3 cut(s)	121, 279, 451
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	563
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	5 cut(s)	121, 132, 279, 451, 505
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	3 cut(s)	121, 322, 661
ScrFI	CCNGG	3 cut(s)	20, 119, 137
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	229
SfuI	TTCGAA	2 cut(s)	554, 566
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	8 cut(s)	214, 313, 397, 403, 415, 529, 550, 765
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	4 cut(s)	80, 140, 338, 602
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	18, 117, 135
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	3 cut(s)	38, 65, 467
TaqI	TCGA	2 cut(s)	554, 566
TasI	AATT	8 cut(s)	214, 313, 397, 403, 415, 529, 550, 765
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	760
TscAI	CASTG	1 cut(s)	295
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	6 cut(s)	214, 313, 397, 403, 415, 550
XmnI	GAANNNNTTC	2 cut(s)	71, 227
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.