Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Forward (+)

15195590 .. 15196671

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGTGACATACCAATCTCATTAGGTATCTACTATCTAGTGCAACTTGTTATTTACTCAAGTGTAGATAATGTTAAGTCCACGATATTTTACATTAGACAACAATTTGGCTTGCAATATCCCCAGTTCAATGGGTGTTCCCAGCTCATTAAAAGTATTGAAGCTGAGCAACAGAAGTTTTGGGATCAGATTCCTTCTTCTATATTCCAAAACTGCACCGAGTTGTTGAGTATTGATCTTGGAGGCAACAGATTTACAGAAGGCATACCTCTACAGAGAAAATCAAATGTCTCATCCAAGTTACATATGCTCCGATTGCGATCAAACTTTTTAAGCGGACATATTCCCCATCAATTGTGCTCTCTTCCATCTCTTCATATCATAGACCTTGGCAACAACAACTTTTCAGGGACCATTCCCAAGTGCTTGTATAATCTGACTGCTTTGGCCTACGATAATGGCGCTCGTAGGTATTTTTTGTTAAATTATCTTGAGACGACCAGCTTGACACTGAAGGGACAAGAACTCGTATATTACACGACTCTAAAATTGGTAAATAACATTGATTTCTCATCAAACATTTTAGAAGGTGAGATCCCTAACGAAGTAAGCAGCCTCATTGCATTTGGCACGTTGAACTTGTCAAGAAATCAATTAAGTGGAAACATTCCTTCAAAGATTGGAAACTTGCAATGGCTGGAAACTCTTGATCTCTCACACAATCACCTCTTCGGGCAGGTTCCTCAAAGTTTCTCTTCATTAACCTCTCTGTCTCACTTGAACTTGTCCAGAAAAATTCCTTCAGGCAACCACTTTCGAACACTCACTGATCCATCCATTTATGTTGGCAATCCATCCTTGTGTGGGGTTCTTGTTTCAACTGTCTGCCCGGGGGCAGGCGCACTGGCACCAACCAACTCTGACGATGATGATCATAATGATGATGATACCGATGAGAACAGGAAGTTTGATATCTATGTTAGCGTTGTACTCGGCTTCCTCATAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

336

Amino Acids

37.37

Weight (kDa)

5.68

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	201 - 267	5.1e-08	Leucine-rich repeat region
LRR_8	PF13855	211 - 264	3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
AccB1I	GGYRCC	1 cut(s)	907
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	3 cut(s)	192, 589, 824
AcsI	RAATTY	1 cut(s)	795
AcuI	CTGAAG	2 cut(s)	533, 786
AfaI	GTAC	1 cut(s)	990
AfiI	CCNNNNNNNGG	2 cut(s)	864, 896
AgsI	TTSAA	6 cut(s)	130, 161, 637, 675, 781, 879
AluBI	AGCT	3 cut(s)	145, 164, 504
AluI	AGCT	3 cut(s)	145, 164, 504
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	295, 488, 777
AlwI	GGATC	3 cut(s)	192, 589, 824
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	612
ApoI	RAATTY	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	464, 902
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	2 cut(s)	890, 891
AsuHPI	GGTGA	2 cut(s)	602, 716
AsuII	TTCGAA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	889
AvaII	GGWCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	907
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	624
BccI	CCATC	4 cut(s)	357, 376, 841, 862
BclI	TGATCA	1 cut(s)	931
BcnI	CCSGG	2 cut(s)	890, 891
BcoDI	GTCTC	3 cut(s)	295, 488, 777
BfaI	CTAG	2 cut(s)	38, 1009
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	1 cut(s)	613
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	614
Bme1390I	CCNGG	2 cut(s)	890, 891
Bme18I	GGWCC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	889
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	3 cut(s)	412, 741, 909
BmrFI	CCNGG	2 cut(s)	890, 891
BmrI	ACTGGG	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	2 cut(s)	43, 512
BpuMI	CCSGG	2 cut(s)	890, 891
BsaBI	GATNNNNATC	2 cut(s)	319, 930
BsaJI	CCNNGG	3 cut(s)	388, 889, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	864, 896
Bse1I	ACTGG	2 cut(s)	124, 909
Bse3DI	GCAATG	2 cut(s)	618, 698
Bse8I	GATNNNNATC	2 cut(s)	319, 930
BseDI	CCNNGG	3 cut(s)	388, 889, 890
BseGI	GGATG	3 cut(s)	293, 833, 854
BseJI	GATNNNNATC	2 cut(s)	319, 930
BseLI	CCNNNNNNNGG	2 cut(s)	864, 896
BseMI	GCAATG	2 cut(s)	618, 698
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	124, 909
BseXI	GCAGC	1 cut(s)	624
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	907
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	890
BslFI	GGGAC	2 cut(s)	424, 531
BslI	CCNNNNNNNGG	2 cut(s)	864, 896
BsmAI	GTCTC	3 cut(s)	295, 488, 777
BsmBI	CGTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	424, 531
BsnI	GGCC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	889
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	3 cut(s)	412, 741, 909
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	3 cut(s)	192, 589, 824
BspT104I	TTCGAA	1 cut(s)	817
BspT107I	GGYRCC	1 cut(s)	907
BsrDI	GCAATG	2 cut(s)	618, 698
BsrI	ACTGG	2 cut(s)	124, 909
BssECI	CCNNGG	3 cut(s)	388, 889, 890
BssMI	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	883
Bst6I	CTCTTC	4 cut(s)	369, 378, 734, 760
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	113, 898
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	293, 833, 854
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	464, 902
BstKTI	GATC	7 cut(s)	187, 238, 323, 597, 712, 832, 934
BstMAI	GTCTC	3 cut(s)	295, 488, 777
BstMBI	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	888, 889
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	293, 833, 854
BtsIMutI	CAGTG	3 cut(s)	509, 825, 902
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	113, 898
CfoI	GCGC	2 cut(s)	464, 902
Cfr13I	GGNCC	1 cut(s)	411
Cfr9I	CCCGGG	1 cut(s)	889
Csp6I	GTAC	1 cut(s)	989
CviJI	RGCY	9 cut(s)	111, 145, 164, 449, 504, 615, 697, 996, 1008
CviKI_1	RGCY	9 cut(s)	111, 145, 164, 449, 504, 615, 697, 996, 1008
CviQI	GTAC	1 cut(s)	989
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	7 cut(s)	186, 237, 322, 596, 711, 831, 933
DpnII	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
Eam1104I	CTCTTC	4 cut(s)	369, 378, 734, 760
EarI	CTCTTC	4 cut(s)	369, 378, 734, 760
Eco130I	CCWWGG	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	2 cut(s)	533, 786
Eco88I	CYCGRG	1 cut(s)	889
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	488
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	2 cut(s)	424, 531
FauNDI	CATATG	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	1 cut(s)	613
FokI	GGATG	3 cut(s)	280, 820, 841
Fsp4HI	GCNGC	1 cut(s)	613
FspBI	CTAG	2 cut(s)	38, 1009
GlaI	GCGC	2 cut(s)	463, 901
GluI	GCNGC	1 cut(s)	613
GsaI	CCCAGC	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	890
HhaI	GCGC	2 cut(s)	464, 902
Hin6I	GCGC	2 cut(s)	462, 900
HinP1I	GCGC	2 cut(s)	462, 900
HinfI	GANTC	2 cut(s)	190, 541
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	2 cut(s)	602, 716
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	4 cut(s)	189, 314, 438, 922
Hpy188III	TCNNGA	4 cut(s)	491, 645, 707, 789
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	6 cut(s)	204, 254, 508, 581, 681, 810
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	5 cut(s)	43, 115, 216, 623, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	632
HspAI	GCGC	2 cut(s)	462, 900
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	38, 1009
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	2 cut(s)	5, 300
MalI	GATC	7 cut(s)	186, 237, 322, 596, 711, 831, 933
MboI	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
MboII	GAAGA	5 cut(s)	189, 356, 365, 721, 747
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	6 cut(s)	104, 353, 484, 548, 653, 795
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	7 cut(s)	236, 279, 626, 737, 753, 775, 1010
MseI	TTAA	6 cut(s)	75, 150, 332, 482, 656, 761
MslI	CAYNNNNRTG	2 cut(s)	859, 939
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	2 cut(s)	890, 891
MunI	CAATTG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	890, 891
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
NlaIV	GGNNCC	3 cut(s)	412, 741, 909
NmeAIII	GCCGAG	1 cut(s)	972
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	614
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	412, 741, 909
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	594
RsaI	GTAC	1 cut(s)	990
RsaNI	GTAC	1 cut(s)	989
RseI	CAYNNNNRTG	2 cut(s)	859, 939
SaqAI	TTAA	6 cut(s)	75, 150, 332, 482, 656, 761
SatI	GCNGC	1 cut(s)	613
Sau3AI	GATC	7 cut(s)	184, 235, 320, 594, 709, 829, 931
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	890, 891
SduI	GDGCHC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	1 cut(s)	411
SmaI	CCCGGG	1 cut(s)	891
SmiMI	CAYNNNNRTG	2 cut(s)	859, 939
SmlI	CTYRAG	2 cut(s)	58, 491
SmoI	CTYRAG	2 cut(s)	58, 491
Sse9I	AATT	6 cut(s)	104, 353, 484, 548, 653, 795
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	2 cut(s)	38, 1009
StyD4I	CCNGG	2 cut(s)	888, 889
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	883
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	1 cut(s)	817
TasI	AATT	6 cut(s)	104, 353, 484, 548, 653, 795
TatI	WGTACW	1 cut(s)	988
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	6 cut(s)	75, 150, 332, 482, 656, 761
Tru9I	TTAA	6 cut(s)	75, 150, 332, 482, 656, 761
TscAI	CASTG	3 cut(s)	516, 832, 909
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	365, 747
TspMI	CCCGGG	1 cut(s)	889
TspRI	CASTG	3 cut(s)	516, 832, 909
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	795
XmaI	CCCGGG	1 cut(s)	889
XspI	CTAG	2 cut(s)	38, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.