Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

2149927 .. 2152641

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG028500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTCCGCCGCTCCTCCACCTCCTCCTCCTCCGCCGCCGCCGCCGCAACCGGAGACCGCTTCCAGGCACCACGCCTATAGCCGGAAGCAGAAGTCTCTCGGCCTCTTGTGCTCCAATTTCATTGCCTTGTACGATCGAGAAGGCGTGACCTCCGTCGGCTTGGACGACGCCGCTGCAAGATTAGATAATAGAAGGGAAAAGTCTCTGGCACTACTTACACAGAATTTTGTGAAGCTCTTCGTCTGCTCCACTACCCACACAGCAGATACAAGGAAGCCTGCATATAAATGGTTGGGATTAAGAGGAAAAGATGCTGCAAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGACATCACAAATGTCAGTTGTAAGAGGGGCAAAGTAGAATCTTCTACTGCTGGGAAATTGGAAGCTCAGAAACAAAAGCAACATGAGAGTACAGTACGGCAACGTGAGAGCATAGTACGTAAGGTTGATAGGAACAATTTAGAGGAGTCGAAAGAAAATACAAAGAGCTACCAGTTTGGCCCTTTTGCTCCAGTTACTATTGCCAGAGCTGGGAATTTCAACATGAAGAAAGTTGACTGGGACAATTTGTCGTCTACTTACCGTCCCCAGTATCAGAATCAAGCTTTGAAGGAGCTGTTTTCTCATTACATGGAAGCATGGAAGTCATGGTACTCTGAAGTTGTTGAGAAGCCAATCCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

242

Amino Acids

27.28

Weight (kDa)

9.55

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	617
AciI	CCGC	9 cut(s)	9, 12, 35, 38, 41, 44, 47, 60, 174
AcsI	RAATTY	2 cut(s)	226, 577
AcuI	CTGAAG	2 cut(s)	315, 720
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	5 cut(s)	134, 454, 459, 480, 695
AfiI	CCNNNNNNNGG	3 cut(s)	66, 84, 573
AgsI	TTSAA	2 cut(s)	583, 652
AhdI	GACNNNNNGTC	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	7 cut(s)	238, 329, 428, 531, 572, 647, 658
AluI	AGCT	7 cut(s)	238, 329, 428, 531, 572, 647, 658
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	3 cut(s)	50, 102, 210
AoxI	GGCC	2 cut(s)	103, 541
ApeKI	GCWGC	2 cut(s)	176, 317
ApoI	RAATTY	2 cut(s)	226, 577
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	163, 304
BceAI	ACGGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	50, 102, 210
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 318
BlsI	GCNGC	8 cut(s)	13, 39, 42, 45, 48, 175, 178, 319
Bme1390I	CCNGG	1 cut(s)	67
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	67
BmrI	ACTGGG	2 cut(s)	610, 625
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	2 cut(s)	610, 625
BoxI	GACNNNNGTC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 84, 573
Bse1I	ACTGG	4 cut(s)	535, 554, 605, 631
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	66, 84, 573
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	4 cut(s)	535, 554, 605, 631
BseRI	GAGGAG	5 cut(s)	6, 15, 18, 21, 521
BseXI	GCAGC	2 cut(s)	163, 304
BseYI	CCCAGC	2 cut(s)	413, 572
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	105, 543
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	53, 85
BslFI	GGGAC	2 cut(s)	612, 617
BslI	CCNNNNNNNGG	3 cut(s)	66, 84, 573
BsmAI	GTCTC	3 cut(s)	50, 102, 210
BsmFI	GGGAC	2 cut(s)	612, 617
BsnI	GGCC	2 cut(s)	105, 543
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	9 cut(s)	9, 12, 35, 38, 41, 44, 47, 60, 174
BspANI	GGCC	2 cut(s)	105, 543
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	4 cut(s)	535, 554, 605, 631
BssMI	GATC	1 cut(s)	136
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	457, 626
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	429
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	3 cut(s)	50, 102, 210
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 46, 111, 326
BstNI	CCWGG	1 cut(s)	67
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	79
BstSNI	TACGTA	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	163, 304
BsuRI	GGCC	2 cut(s)	105, 543
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	5 cut(s)	133, 453, 458, 479, 694
CviAII	CATG	5 cut(s)	446, 586, 673, 681, 690
CviQI	GTAC	5 cut(s)	133, 453, 458, 479, 694
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	245
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	24
Eco105I	TACGTA	1 cut(s)	482
Eco31I	GGTCTC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	315, 720
EcoRII	CCWGG	1 cut(s)	65
FaeI	CATG	5 cut(s)	449, 589, 676, 684, 693
FaiI	YATR	9 cut(s)	81, 286, 288, 447, 476, 587, 674, 682, 691
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FaqI	GGGAC	2 cut(s)	612, 617
FatI	CATG	5 cut(s)	445, 585, 672, 680, 689
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 318
Fsp4HI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 318
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 318
GsaI	CCCAGC	2 cut(s)	417, 576
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	105, 543
HapII	CCGG	2 cut(s)	53, 85
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	449, 589, 676, 684, 693
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	5 cut(s)	5, 338, 401, 509, 640
HpaII	CCGG	2 cut(s)	53, 85
Hpy166II	GTNNAC	2 cut(s)	598, 618
Hpy188I	TCNGA	4 cut(s)	334, 432, 639, 700
Hpy188III	TCNNGA	2 cut(s)	140, 342
Hpy8I	GTNNAC	2 cut(s)	598, 618
Hpy99I	CGWCG	2 cut(s)	161, 173
HpyAV	CCTTC	3 cut(s)	137, 189, 646
HpyCH4III	ACNGT	2 cut(s)	457, 626
HpyCH4IV	ACGT	2 cut(s)	466, 481
HpyCH4V	TGCA	3 cut(s)	179, 284, 320
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 46, 111, 326
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	2 cut(s)	466, 481
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	449, 589, 676, 684, 693
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	5 cut(s)	19, 119, 254, 556, 655
Lsp1109I	GCAGC	2 cut(s)	163, 304
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	466, 481
MaeIII	GTNAC	2 cut(s)	148, 556
MalI	GATC	1 cut(s)	138
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	1 cut(s)	136
MboII	GAAGA	3 cut(s)	232, 396, 601
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	6 cut(s)	118, 226, 419, 499, 577, 607
MlyI	GAGTC	3 cut(s)	14, 347, 518
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	289
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	53, 85
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	4 cut(s)	43, 46, 111, 326
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	5 cut(s)	449, 589, 676, 684, 693
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	401, 640
PkrI	GCNGC	8 cut(s)	13, 39, 42, 45, 48, 175, 178, 319
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	3 cut(s)	13, 346, 517
PpsI	GAGTC	3 cut(s)	13, 346, 517
Ppu21I	YACGTR	1 cut(s)	482
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	2 cut(s)	413, 572
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	542
PvuI	CGATCG	1 cut(s)	139
RsaI	GTAC	5 cut(s)	134, 454, 459, 480, 695
RsaNI	GTAC	5 cut(s)	133, 453, 458, 479, 694
RseI	CAYNNNNRTG	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 318
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	3 cut(s)	14, 347, 518
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	289
SnaBI	TACGTA	1 cut(s)	482
Sse9I	AATT	6 cut(s)	118, 226, 419, 499, 577, 607
SsiI	CCGC	9 cut(s)	9, 12, 35, 38, 41, 44, 47, 60, 174
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	457, 626
TaiI	ACGT	2 cut(s)	469, 484
TaqI	TCGA	2 cut(s)	139, 512
TasI	AATT	6 cut(s)	118, 226, 419, 499, 577, 607
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	6 cut(s)	14, 40, 43, 46, 49, 176
TfiI	GAWTC	2 cut(s)	401, 640
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	176, 317
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	112, 602
TspGWI	ACGGA	1 cut(s)	145
XapI	RAATTY	2 cut(s)	226, 577
XbaI	TCTAGA	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.