Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

1863568 .. 1866376

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAGTCCGCCGCTCCTCCACCTCCTCCTCCCCCGCCGCCGCCGCCGCAACCGGAGACCGCTTCCAGGCACCACGCCTATAGCCGGAAGCAGAAGTCTCTCGGCCTCTTGTGCTCCAATTTCATTGCCTTGTACGATCGAGAAGGCGTGACCTCCGTCGGCTTGGACGACGCCGCTGCAAGATTAGGTGTGGAGAGGCGACGGATCTACGATATCGTTAATGTGCTTGAGAGCGTTGGGGTTCTTTCGCGAAAGGCGAAGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTATTGCTTTACAGGATCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCATGGCAATCTCCAGGGCAATGATGATCCGAAAGGTTCAGATGATGAGGAAGGTGATGAGAGTGGTCCTGCAACTGGGAGTCAGAATGAGAACCCCGGTGTCCATCCCAAATCTTCAGGAAACTCGAAAAATGATAATAGAAGGGAAAAGTCTCTGGCACTTCTTACACAGAATTTTGTGAAGCTCTTCGTCTGCTCCACTGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCTGTAATGAGAACTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTTGTCCTCCATGAATCTTATTGAAAAGACCCACACAGCAGATACAAGGAAGCCGGCATACAAATGGTTGGGATTGAAAGGAAAAGAGGCCATGAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGACATCACAAACGTCAGTTGTAAGAGGGGAAAAGTAGAATCTTCTACTGCTGGGAAATTGGAAGCTCAGAAACAAAAGCAACATGAGACTACAGTACGGCAACGTGAGAGACGTGAGAGCATAGTACATAAGGTTGATAGGAACAATTTAGAGGAGTCGAAAGAAAATACAAAGAGCTACCAGTTTGGCCCTTTTGCTCCAGTTACTATTGCCAGAGCTGGGAATTTCAACATGAAGAAGGTTGACTGGGACAATTTGTCGTCTACTTACCGTCCCCAGTATCAGAATCAAGCTTTGAAGGAGCTGTTTTCTCATTACATGGAAGCATGGAAGTCATGGTACTCTGAAGTTGTTGAGAAGCCAATCCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

389

Amino Acids

43.49

Weight (kDa)

9.06

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	30 - 94	3.7e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	165 - 244	2.6e-19	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	269, 1058
AccII	CGCG	1 cut(s)	250
AclWI	GGATC	3 cut(s)	212, 318, 371
AcsI	RAATTY	2 cut(s)	523, 1018
AcuI	CTGAAG	3 cut(s)	450, 747, 1161
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	4 cut(s)	134, 891, 921, 1136
AfiI	CCNNNNNNNGG	4 cut(s)	66, 84, 425, 1014
AgsI	TTSAA	5 cut(s)	343, 683, 736, 1024, 1093
AhdI	GACNNNNNGTC	1 cut(s)	1051
AjiI	CACGTC	1 cut(s)	908
AjnI	CCWGG	2 cut(s)	65, 363
AluBI	AGCT	8 cut(s)	535, 578, 761, 860, 972, 1013, 1088, 1099
AluI	AGCT	8 cut(s)	535, 578, 761, 860, 972, 1013, 1088, 1099
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	5 cut(s)	50, 102, 507, 875, 898
AlwI	GGATC	3 cut(s)	212, 318, 371
AoxI	GGCC	3 cut(s)	103, 747, 982
ApeKI	GCWGC	2 cut(s)	176, 578
ApoI	RAATTY	2 cut(s)	523, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
Asp700I	GAANNNNTTC	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	416, 983
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	4 cut(s)	701, 733, 1118, 1150
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	163, 565
BccI	CCATC	2 cut(s)	462, 569
BceAI	ACGGC	1 cut(s)	908
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	67, 365
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	5 cut(s)	50, 102, 507, 875, 898
BfaI	CTAG	1 cut(s)	774
BfmI	CTRYAG	3 cut(s)	79, 552, 885
BisI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 579
BlsI	GCNGC	8 cut(s)	13, 39, 42, 45, 48, 175, 178, 580
Bme1390I	CCNGG	3 cut(s)	67, 365, 447
Bme18I	GGWCC	1 cut(s)	416
BmeRI	GACNNNNNGTC	1 cut(s)	1051
BmgBI	CACGTC	1 cut(s)	908
BmgT120I	GGNCC	2 cut(s)	416, 983
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	3 cut(s)	67, 365, 447
BmrI	ACTGGG	3 cut(s)	435, 1051, 1066
BmsI	GCATC	2 cut(s)	589, 620
BmuI	ACTGGG	3 cut(s)	435, 1051, 1066
BoxI	GACNNNNGTC	1 cut(s)	155
BpmI	CTGGAG	2 cut(s)	347, 978
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	352, 364, 445
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 84, 425, 1014
Bse118I	RCCGGY	1 cut(s)	712
Bse1I	ACTGG	6 cut(s)	265, 430, 976, 995, 1046, 1072
Bse3DI	GCAATG	2 cut(s)	123, 376
BseBI	CCWGG	2 cut(s)	67, 365
BseDI	CCNNGG	3 cut(s)	352, 364, 445
BseGI	GGATG	2 cut(s)	454, 604
BseLI	CCNNNNNNNGG	4 cut(s)	66, 84, 425, 1014
BseMI	GCAATG	2 cut(s)	123, 376
BseMII	CTCAG	1 cut(s)	875
BseNI	ACTGG	6 cut(s)	265, 430, 976, 995, 1046, 1072
BseRI	GAGGAG	4 cut(s)	6, 15, 18, 962
BseXI	GCAGC	2 cut(s)	163, 565
BseYI	CCCAGC	2 cut(s)	845, 1013
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	105, 749, 984
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	53, 85, 447, 713
BslFI	GGGAC	2 cut(s)	1053, 1058
BslI	CCNNNNNNNGG	4 cut(s)	66, 84, 425, 1014
BsmAI	GTCTC	5 cut(s)	50, 102, 507, 875, 898
BsmBI	CGTCTC	1 cut(s)	898
BsmFI	GGGAC	2 cut(s)	1053, 1058
BsnI	GGCC	3 cut(s)	105, 749, 984
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	136, 204, 310, 376
Bsp19I	CCATGG	1 cut(s)	352
Bsp68I	TCGCGA	1 cut(s)	250
BspANI	GGCC	3 cut(s)	105, 749, 984
BspCNI	CTCAG	1 cut(s)	874
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	3 cut(s)	212, 318, 371
BspQI	GCTCTTC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	123, 376
BsrFI	RCCGGY	1 cut(s)	712
BsrI	ACTGG	6 cut(s)	265, 430, 976, 995, 1046, 1072
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	3 cut(s)	352, 364, 445
BssMI	GATC	4 cut(s)	136, 204, 310, 376
BssNAI	GTATAC	1 cut(s)	270
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	67, 365
Bst4CI	ACNGT	3 cut(s)	553, 889, 1067
Bst6I	CTCTTC	2 cut(s)	315, 542
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	1 cut(s)	861
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	454, 604
BstFNI	CGCG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	139, 207, 313, 379
BstMAI	GTCTC	5 cut(s)	50, 102, 507, 875, 898
BstMBI	GATC	4 cut(s)	136, 204, 310, 376
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 46, 111, 608
BstNI	CCWGG	2 cut(s)	67, 365
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	3 cut(s)	65, 363, 445
BstSFI	CTRYAG	3 cut(s)	79, 552, 885
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	163, 565
BstX2I	RGATCY	2 cut(s)	204, 310
BstYI	RGATCY	2 cut(s)	204, 310
BstZ17I	GTATAC	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	105, 749, 984
BtgI	CCRYGG	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	908
BtsCI	GGATG	2 cut(s)	454, 604
BtsIMutI	CAGTG	1 cut(s)	549
BtuMI	TCGCGA	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	714
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	2 cut(s)	416, 983
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	4 cut(s)	133, 890, 920, 1135
CviAII	CATG	8 cut(s)	353, 670, 751, 878, 1027, 1114, 1122, 1131
CviQI	GTAC	4 cut(s)	133, 890, 920, 1135
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	4 cut(s)	138, 206, 312, 378
DpnII	GATC	4 cut(s)	136, 204, 310, 376
DriI	GACNNNNNGTC	1 cut(s)	1051
Eam1104I	CTCTTC	2 cut(s)	315, 542
Eam1105I	GACNNNNNGTC	1 cut(s)	1051
EarI	CTCTTC	2 cut(s)	315, 542
EciI	GGCGGA	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	3 cut(s)	450, 747, 1161
EcoRII	CCWGG	2 cut(s)	65, 363
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	898
FaeI	CATG	8 cut(s)	356, 673, 754, 881, 1030, 1117, 1125, 1134
FaqI	GGGAC	2 cut(s)	1053, 1058
FatI	CATG	8 cut(s)	352, 669, 750, 877, 1026, 1113, 1121, 1130
FauI	CCCGC	1 cut(s)	42
FblI	GTMKAC	2 cut(s)	269, 1058
Fnu4HI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 579
FokI	GGATG	2 cut(s)	441, 611
Fsp4HI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 579
FspBI	CTAG	1 cut(s)	774
GluI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 579
GsaI	CCCAGC	2 cut(s)	849, 1017
GsuI	CTGGAG	2 cut(s)	347, 978
HaeIII	GGCC	3 cut(s)	105, 749, 984
HapII	CCGG	4 cut(s)	53, 85, 447, 713
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	356, 673, 754, 881, 1030, 1117, 1125, 1134
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HindIII	AAGCTT	1 cut(s)	1086
HinfI	GANTC	8 cut(s)	5, 430, 557, 673, 770, 833, 950, 1081
HpaII	CCGG	4 cut(s)	53, 85, 447, 713
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	270, 1039, 1059
Hpy188I	TCNGA	8 cut(s)	330, 381, 391, 435, 766, 864, 1080, 1141
Hpy188III	TCNNGA	4 cut(s)	140, 249, 468, 774
Hpy8I	GTNNAC	3 cut(s)	270, 1039, 1059
Hpy99I	CGWCG	3 cut(s)	161, 173, 204
HpyAV	CCTTC	5 cut(s)	137, 395, 486, 1027, 1087
HpyCH4III	ACNGT	3 cut(s)	553, 889, 1067
HpyCH4IV	ACGT	3 cut(s)	807, 898, 907
HpyCH4V	TGCA	6 cut(s)	179, 422, 581, 602, 611, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 46, 111, 608
HpyF3I	CTNAG	1 cut(s)	861
HpySE526I	ACGT	3 cut(s)	807, 898, 907
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	8 cut(s)	356, 673, 754, 881, 1030, 1117, 1125, 1134
KroI	GCCGGC	1 cut(s)	712
KroNI	GCCGGC	1 cut(s)	714
Kzo9I	GATC	4 cut(s)	136, 204, 310, 376
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	5 cut(s)	19, 119, 551, 997, 1096
Lsp1109I	GCAGC	2 cut(s)	163, 565
LweI	GCATC	2 cut(s)	589, 620
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	3 cut(s)	807, 898, 907
MaeIII	GTNAC	2 cut(s)	148, 997
MalI	GATC	4 cut(s)	138, 206, 312, 378
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	4 cut(s)	136, 204, 310, 376
MboII	GAAGA	6 cut(s)	271, 332, 456, 529, 828, 1042
MflI	RGATCY	2 cut(s)	204, 310
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	6 cut(s)	118, 523, 851, 940, 1018, 1048
MlyI	GAGTC	4 cut(s)	14, 439, 779, 959
Mph1103I	ATGCAT	1 cut(s)	613
MroNI	GCCGGC	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	721
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	4 cut(s)	53, 85, 447, 713
MspR9I	CCNGG	3 cut(s)	67, 365, 447
MvaI	CCWGG	2 cut(s)	67, 365
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	43, 46, 111, 608
NaeI	GCCGGC	1 cut(s)	714
NciI	CCSGG	1 cut(s)	447
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	4 cut(s)	136, 204, 310, 376
NgoMIV	GCCGGC	1 cut(s)	712
NlaIII	CATG	8 cut(s)	356, 673, 754, 881, 1030, 1117, 1125, 1134
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	148
NruI	TCGCGA	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 254, 904
PdiI	GCCGGC	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	4 cut(s)	557, 673, 833, 1081
PkrI	GCNGC	8 cut(s)	13, 39, 42, 45, 48, 175, 178, 580
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	4 cut(s)	13, 438, 778, 958
PpsI	GAGTC	4 cut(s)	13, 438, 778, 958
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	65, 363
PspFI	CCCAGC	2 cut(s)	845, 1013
PspGI	CCWGG	2 cut(s)	65, 363
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	416, 983
PsuI	RGATCY	2 cut(s)	204, 310
PvuI	CGATCG	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	250
RsaI	GTAC	4 cut(s)	134, 891, 921, 1136
RsaNI	GTAC	4 cut(s)	133, 890, 920, 1135
RseI	CAYNNNNRTG	1 cut(s)	721
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	8 cut(s)	12, 38, 41, 44, 47, 174, 177, 579
Sau3AI	GATC	4 cut(s)	136, 204, 310, 376
Sau96I	GGNCC	2 cut(s)	416, 983
SchI	GAGTC	4 cut(s)	14, 439, 779, 959
ScrFI	CCNGG	3 cut(s)	67, 365, 447
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	2 cut(s)	589, 620
SfcI	CTRYAG	3 cut(s)	79, 552, 885
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	721
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	118, 523, 851, 940, 1018, 1048
SspMI	CTAG	1 cut(s)	774
StyD4I	CCNGG	3 cut(s)	65, 363, 445
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	553, 889, 1067
TaiI	ACGT	3 cut(s)	810, 901, 910
TaqI	TCGA	3 cut(s)	139, 476, 953
TasI	AATT	6 cut(s)	118, 523, 851, 940, 1018, 1048
TatI	WGTACW	1 cut(s)	919
TauI	GCSGC	6 cut(s)	14, 40, 43, 46, 49, 176
TfiI	GAWTC	4 cut(s)	557, 673, 833, 1081
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	176, 578
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	112, 588, 686, 1043
TspGWI	ACGGA	2 cut(s)	145, 217
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	523, 1018
XbaI	TCTAGA	1 cut(s)	773
XmiI	GTMKAC	2 cut(s)	269, 1058
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	774
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.