Rroxscaffold_7G00170270

GTP-binding protein TypA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000573
Physical Location & Seq
Forward (+)
10724170 .. 10726097
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170270.1

Sequence Viewer

Length: 621 bp
ATGGTGGAGCTCATCGGCGGTGCATGTCGACCGCTTTTCCGGAAGCTTGATGGCCTCTTTCGACCGGTCATTGGAGAAAGCTCGACGAGGATCGAGAAGGAGAACGACGACAGCACCCGACGTGCCGAGGAGGCGCATTGTGGTGGTGAAGTGGAGCTGGTTGTTGGTATGGTGGAGGGAACAGTTTTGGTTGTTGATGCGGGGGAAGCCTGCAGTTTTGAAGAGATGTGCGATGAAGATAAGAGTCGAGTATTTGATCCTTTCGCAAATCTCGGTGCTACGGAAGGAGCACTGGATTTTCTGTGCTATGTGCTTCTGCTAAAGAAGAGATGGGAGTTCAAGATCGGTGAGGTTGGGAACTGCAATTCGAATGGTTGTGGGGCGAAGGAGAGTTCAAAGAGCGGCCAGCTTGGTCCATTCGCTCCGGTGGCAGTTCCAAGAACTAAGAAAGGTGTTGACATCAACAAGGTTGTTGGGAGAGTCTTGGACTCTTGGGGCTTATTATTGGCCTCGGTATCGGAAGCGCCAAGGGAAAAAGAAGAGTTCGGGAACTTCATGCCACAAGCCATTACTGTGCCTGGTCCCGAAGTTGACCAATTGGCTTCAATGGATGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

206

Amino Acids

22.22

Weight (kDa)

4.77

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 402
AccI GTMKAC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 4 cut(s) 18, 32, 200, 402
AclWI GGATC 2 cut(s) 98, 251
AcoI YGGCCR 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 71
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 4 cut(s) 221, 340, 396, 606
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 5 cut(s) 10, 46, 81, 157, 409
AluI AGCT 5 cut(s) 10, 46, 81, 157, 409
Alw21I GWGCWC 2 cut(s) 12, 292
AlwI GGATC 2 cut(s) 98, 251
Aor13HI TCCGGA 1 cut(s) 39
AoxI GGCC 3 cut(s) 52, 403, 507
AsiGI ACCGGT 1 cut(s) 64
AspLEI GCGC 2 cut(s) 136, 526
AspS9I GGNCC 2 cut(s) 413, 581
AsuHPI GGTGA 2 cut(s) 158, 359
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 2 cut(s) 413, 581
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 12, 292
BccI CCATC 3 cut(s) 44, 324, 605
BciT130I CCWGG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 2 cut(s) 413, 581
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 413, 581
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 126, 510, 527
BsaWI WCCGGW 3 cut(s) 39, 64, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 39
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 3 cut(s) 126, 510, 527
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 143
Bsh1285I CGRYCG 2 cut(s) 32, 65
BshFI GGCC 3 cut(s) 54, 405, 509
BshTI ACCGGT 1 cut(s) 64
BsiEI CGRYCG 2 cut(s) 32, 65
BsiHKAI GWGCWC 2 cut(s) 12, 292
BsiSI CCGG 3 cut(s) 40, 65, 425
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 567
BsnI GGCC 3 cut(s) 54, 405, 509
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 12, 292
Bsp13I TCCGGA 1 cut(s) 39
Bsp143I GATC 3 cut(s) 90, 256, 342
BspACI CCGC 4 cut(s) 18, 32, 200, 402
BspANI GGCC 3 cut(s) 54, 405, 509
BspEI TCCGGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 583
BspMAI CTGCAG 1 cut(s) 215
BspPI GGATC 2 cut(s) 98, 251
BspT104I TTCGAA 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 126, 510, 527
BssMI GATC 3 cut(s) 90, 256, 342
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 184, 574
Bst6I CTCTTC 3 cut(s) 216, 320, 534
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 211, 407
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 616
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 136, 526
BstKTI GATC 3 cut(s) 93, 259, 345
BstMBI GATC 3 cut(s) 90, 256, 342
BstMCI CGRYCG 2 cut(s) 32, 65
BstMWI GCNNNNNNNGC 3 cut(s) 131, 206, 428
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 1 cut(s) 211
BsuRI GGCC 3 cut(s) 54, 405, 509
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 211, 407
CfoI GCGC 2 cut(s) 136, 526
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 413, 581
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 2 cut(s) 24, 556
DdeI CTNAG 1 cut(s) 444
DpnI GATC 3 cut(s) 92, 258, 344
DpnII GATC 3 cut(s) 90, 256, 342
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 3 cut(s) 216, 320, 534
EarI CTCTTC 3 cut(s) 216, 320, 534
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 413, 581
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 2 cut(s) 27, 559
FaiI YATR 4 cut(s) 25, 170, 309, 557
FaqI GGGAC 1 cut(s) 567
FatI CATG 2 cut(s) 23, 555
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 403
GlaI GCGC 2 cut(s) 135, 525
GluI GCNGC 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 3 cut(s) 54, 405, 509
HapII CCGG 3 cut(s) 40, 65, 425
HhaI GCGC 2 cut(s) 136, 526
Hin1II CATG 2 cut(s) 27, 559
Hin6I GCGC 2 cut(s) 134, 524
HinP1I GCGC 2 cut(s) 134, 524
HincII GTYRAC 3 cut(s) 29, 457, 592
HindII GTYRAC 3 cut(s) 29, 457, 592
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 3 cut(s) 244, 480, 488
HpaII CCGG 3 cut(s) 40, 65, 425
HphI GGTGA 2 cut(s) 158, 359
Hpy166II GTNNAC 3 cut(s) 29, 457, 592
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 5 cut(s) 40, 94, 340, 547, 584
Hpy8I GTNNAC 3 cut(s) 29, 457, 592
Hpy99I CGWCG 3 cut(s) 88, 110, 123
HpyAV CCTTC 3 cut(s) 91, 278, 379
HpyCH4III ACNGT 2 cut(s) 184, 574
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 23, 213, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 206, 428
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 2 cut(s) 27, 559
HspAI GCGC 2 cut(s) 134, 524
Kpn2I TCCGGA 1 cut(s) 39
Kzo9I GATC 3 cut(s) 90, 256, 342
LmnI GCTCC 4 cut(s) 7, 154, 287, 427
LpnPI CCDG 9 cut(s) 53, 78, 143, 223, 278, 419, 438, 564, 591
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 121
MalI GATC 3 cut(s) 92, 258, 344
MbiI CCGCTC 1 cut(s) 402
MboI GATC 3 cut(s) 90, 256, 342
MboII GAAGA 4 cut(s) 233, 248, 337, 551
MfeI CAATTG 1 cut(s) 596
MhlI GDGCHC 2 cut(s) 12, 292
MluCI AATT 2 cut(s) 364, 596
MlyI GAGTC 3 cut(s) 253, 482, 489
MnlI CCTC 7 cut(s) 65, 81, 121, 124, 169, 343, 520
MroI TCCGGA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 141, 572
MspI CCGG 3 cut(s) 40, 65, 425
MspR9I CCNGG 1 cut(s) 579
MunI CAATTG 1 cut(s) 596
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 131, 206, 428
NdeII GATC 3 cut(s) 90, 256, 342
NlaIII CATG 2 cut(s) 27, 559
NlaIV GGNNCC 1 cut(s) 583
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 27
NspV TTCGAA 1 cut(s) 368
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 1 cut(s) 404
PleI GAGTC 3 cut(s) 252, 482, 488
PpsI GAGTC 3 cut(s) 252, 482, 488
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 2 cut(s) 413, 581
PstI CTGCAG 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 141, 572
SacI GAGCTC 1 cut(s) 12
SalI GTCGAC 1 cut(s) 27
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 3 cut(s) 90, 256, 342
Sau96I GGNCC 2 cut(s) 413, 581
SchI GAGTC 3 cut(s) 253, 482, 489
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 2 cut(s) 12, 292
SetI ASST 9 cut(s) 12, 48, 83, 124, 159, 354, 411, 454, 471
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 2 cut(s) 413, 581
SmiMI CAYNNNNRTG 2 cut(s) 141, 572
Sse9I AATT 2 cut(s) 364, 596
SsiI CCGC 4 cut(s) 18, 32, 200, 402
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 184, 574
TaiI ACGT 1 cut(s) 124
TaqI TCGA 6 cut(s) 28, 61, 83, 93, 247, 368
TasI AATT 2 cut(s) 364, 596
TauI GCSGC 1 cut(s) 405
TscAI CASTG 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 249, 544
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 413, 581
XceI RCATGY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.