Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

51182712 .. 51183545

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCACTTCCTCCTACCTGGAAACCCCCCAAACGTCAAGAAAGTCCAAGAACACGCACACGTGGAAGGGTTTCGGCGCGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCTGCCTGCAATAACAACAACAATCCCCTGGATGAGACCAAGAGGGAAAAGTCTCTAGCGCTTCTGGCGCAGAATTTTGAGCCGAATTTGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTATGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGACTGTGGGGCGAATTCGAAGGAGAGTTCGAAGAGCTACCAGCTTGGTCTTTTCACTCCGGTGGCGGTTCCAAGAGCTAGGAAGGGTGTTGACATCAACGAGGTTTGCTGGGAGAGTCTTGGGGCTTATCATCAGCCTCAGTATCAGAACCAAGCGTTGAAGGAGCTGTTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGTTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

195

Amino Acids

21.94

Weight (kDa)

7.64

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	2 cut(s)	80, 410
AclWI	GGATC	2 cut(s)	127, 129
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	211, 223, 358
AcuI	CTGAAG	1 cut(s)	116
AcvI	CACGTG	1 cut(s)	63
AfeI	AGCGCT	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	311, 505
AjnI	CCWGG	3 cut(s)	18, 117, 165
AjuI	GAANNNNNNNTTGG	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	6 cut(s)	103, 249, 381, 388, 422, 511
AluI	AGCT	6 cut(s)	103, 249, 381, 388, 422, 511
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	167, 195
AlwI	GGATC	2 cut(s)	127, 129
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	2 cut(s)	3, 115
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	3 cut(s)	211, 223, 358
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	3 cut(s)	80, 199, 208
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	2 cut(s)	362, 374
AvaII	GGWCC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	127
BciT130I	CCWGG	3 cut(s)	20, 119, 167
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	167, 195
BfaI	CTAG	2 cut(s)	194, 423
BfoI	RGCGCY	1 cut(s)	200
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	4 cut(s)	20, 119, 137, 167
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 414
BmrFI	CCNGG	4 cut(s)	20, 119, 137, 167
Bpu14I	TTCGAA	2 cut(s)	362, 374
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	20, 119, 167
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	175, 349, 543
BseMII	CTCAG	2 cut(s)	118, 497
BseRI	GAGGAG	2 cut(s)	259, 298
BseXI	GCAGC	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	5, 117
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	137, 404
BslFI	GGGAC	2 cut(s)	68, 268
BsmAI	GTCTC	2 cut(s)	167, 195
BsmFI	GGGAC	2 cut(s)	68, 268
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	5, 117
Bso31I	GGTCTC	1 cut(s)	167
Bsp119I	TTCGAA	2 cut(s)	362, 374
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	121, 132, 259, 313
BspACI	CCGC	2 cut(s)	80, 410
BspANI	GGCC	2 cut(s)	5, 117
BspCNI	CTCAG	2 cut(s)	117, 496
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	84, 414
BspPI	GGATC	2 cut(s)	127, 129
BspQI	GCTCTTC	1 cut(s)	371
BspT104I	TTCGAA	2 cut(s)	362, 374
BspTNI	GGTCTC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	121, 132, 259, 313
Bst2UI	CCWGG	3 cut(s)	20, 119, 167
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	3 cut(s)	236, 296, 371
BstBAI	YACGTR	1 cut(s)	63
BstBI	TTCGAA	2 cut(s)	362, 374
BstC8I	GCNNGC	2 cut(s)	145, 234
BstDEI	CTNAG	3 cut(s)	104, 237, 483
BstF5I	GGATG	3 cut(s)	175, 349, 543
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	3 cut(s)	80, 199, 208
BstKTI	GATC	4 cut(s)	124, 135, 262, 316
BstMAI	GTCTC	2 cut(s)	167, 195
BstMBI	GATC	4 cut(s)	121, 132, 259, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 205
BstNI	CCWGG	3 cut(s)	20, 119, 167
BstSCI	CCNGG	4 cut(s)	18, 117, 135, 165
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	121, 259
BstYI	RGATCY	2 cut(s)	121, 259
BsuRI	GGCC	2 cut(s)	5, 117
BtsCI	GGATG	3 cut(s)	175, 349, 543
Cac8I	GCNNGC	2 cut(s)	145, 234
CfoI	GCGC	3 cut(s)	80, 199, 208
Cfr13I	GGNCC	1 cut(s)	82
DdeI	CTNAG	3 cut(s)	104, 237, 483
DpnI	GATC	4 cut(s)	123, 134, 261, 315
DpnII	GATC	4 cut(s)	121, 132, 259, 313
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	236, 296, 371
EarI	CTCTTC	3 cut(s)	236, 296, 371
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	82
Eco47III	AGCGCT	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	116
Eco72I	CACGTG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	18, 117, 165
EcoT38I	GRGCYC	1 cut(s)	105
FaiI	YATR	2 cut(s)	296, 525
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	2 cut(s)	68, 268
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	3 cut(s)	182, 356, 550
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	194, 423
GlaI	GCGC	3 cut(s)	79, 198, 207
GluI	GCNGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	457
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	5, 117
HapII	CCGG	2 cut(s)	137, 404
HhaI	GCGC	3 cut(s)	80, 199, 208
Hin6I	GCGC	3 cut(s)	78, 197, 206
HinP1I	GCGC	3 cut(s)	78, 197, 206
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	127, 460, 568
HpaII	CCGG	2 cut(s)	137, 404
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	7 cut(s)	107, 126, 132, 264, 343, 492, 579
Hpy188III	TCNNGA	3 cut(s)	39, 311, 585
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	6 cut(s)	61, 91, 107, 358, 421, 499
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	35, 62
HpyCH4V	TGCA	2 cut(s)	147, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 205
HpyF3I	CTNAG	3 cut(s)	104, 237, 483
HpySE526I	ACGT	2 cut(s)	35, 62
HspAI	GCGC	3 cut(s)	78, 197, 206
Kzo9I	GATC	4 cut(s)	121, 132, 259, 313
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	5 cut(s)	100, 229, 246, 285, 508
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	194, 423
MaeII	ACGT	2 cut(s)	35, 62
MalI	GATC	4 cut(s)	123, 134, 261, 315
MboI	GATC	4 cut(s)	121, 132, 259, 313
MboII	GAAGA	5 cut(s)	122, 253, 313, 388, 577
MflI	RGATCY	2 cut(s)	121, 259
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	211, 223, 337, 358, 573
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	121, 469
MnlI	CCTC	7 cut(s)	22, 174, 237, 276, 316, 439, 492
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	137, 404
MspR9I	CCNGG	4 cut(s)	20, 119, 137, 167
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	3 cut(s)	20, 119, 167
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	203, 205
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	4 cut(s)	121, 132, 259, 313
NlaIV	GGNNCC	2 cut(s)	84, 414
NspV	TTCGAA	2 cut(s)	362, 374
OliI	CACNNNNGTG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	371
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	121, 468
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
PpsI	GAGTC	2 cut(s)	121, 468
Ppu21I	YACGTR	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	18, 117, 165
PspCI	CACGTG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	3 cut(s)	18, 117, 165
PspN4I	GGNNCC	2 cut(s)	84, 414
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	121, 259
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	371
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	121, 132, 259, 313
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	121, 469
ScrFI	CCNGG	4 cut(s)	20, 119, 137, 167
SduI	GDGCHC	1 cut(s)	105
SfuI	TTCGAA	2 cut(s)	362, 374
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	5 cut(s)	211, 223, 337, 358, 573
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	80, 410
SspMI	CTAG	2 cut(s)	194, 423
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	18, 117, 135, 165
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	2 cut(s)	38, 65
TaqI	TCGA	2 cut(s)	362, 374
TasI	AATT	5 cut(s)	211, 223, 337, 358, 573
TfiI	GAWTC	1 cut(s)	568
TseI	GCWGC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	3 cut(s)	211, 223, 358
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	194, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.