Rroxscaffold_2G00107640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000573
Physical Location & Seq
Reverse (-)
31649523 .. 31650484
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107640.1

Sequence Viewer

Length: 603 bp
ATGACCTCCCTAATCGGAATCGGGGCATCACCGGCCATGAGGACCCCCGGTTTCGATCTCCGGTTCCACCAAGGATGCTGCATGCACCGGACACACCACCGAGGACCACGCGGCGAGTTGAATGGTTTCGTCGAATTTGGAGCGAGGCTAAGAAGAGGAGCTTTGGGACAGTATCCGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAAGGTGAGGTTGAGAACTGCAATTCGAATGGCCGTGGGGCGAAGGAGAGTTCGAAGAGTCGCCGGCTTGGTCCTTTCGCTCCGGTGGCAGTTCCAAGAGCTAGGAAGGGTGTTGACATCAACAAGGTTTGCCGGGAGAGCATTATTATCACATTTCCGAGTTGGAAAATGGATCTTCTAGCAATATCGTATTGTTTCGTCGGAAATTATGGGAATGTACTTTGTGTCATCTATTCTTTGATCGAGAAAAAGTTTGGCAACCGAGTACAGGATGATCATAACAGATGTGGGATGAATACTTGGAAATTGGTCAAGGACGTTAAGCTAAGGCTACCAAAGAAAGGATTTGGAAAGGACTCGAAAGTGTGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.32

Weight (kDa)

10.07

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 2 cut(s) 33, 259
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 447, 495
AfiI CCNNNNNNNGG 2 cut(s) 496, 569
AgsI TTSAA 2 cut(s) 121, 224
AluBI AGCT 3 cut(s) 161, 329, 553
AluI AGCT 3 cut(s) 161, 329, 553
Alw21I GWGCWC 1 cut(s) 599
Alw44I GTGCAC 1 cut(s) 595
AlwI GGATC 1 cut(s) 408
AoxI GGCC 2 cut(s) 33, 259
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 42, 104, 299
AsuC2I CCSGG 2 cut(s) 48, 362
AsuHPI GGTGA 2 cut(s) 21, 245
AsuII TTCGAA 2 cut(s) 254, 281
AvaII GGWCC 3 cut(s) 42, 104, 299
BaeGI GKGCMC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 246
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 2 cut(s) 48, 362
BfaI CTAG 2 cut(s) 330, 407
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 79, 112
BlsI GCNGC 2 cut(s) 80, 113
Bme1390I CCNGG 2 cut(s) 48, 362
Bme18I GGWCC 3 cut(s) 42, 104, 299
BmgT120I GGNCC 3 cut(s) 42, 104, 299
BmiI GGNNCC 2 cut(s) 44, 65
BmrFI CCNGG 2 cut(s) 48, 362
BmsI GCATC 2 cut(s) 35, 65
Bpu10I CCTNAGC 1 cut(s) 554
Bpu14I TTCGAA 2 cut(s) 254, 281
BpuMI CCSGG 2 cut(s) 48, 362
BsaJI CCNNGG 4 cut(s) 46, 70, 100, 262
BsaWI WCCGGW 3 cut(s) 60, 87, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 569
Bse118I RCCGGY 2 cut(s) 31, 291
BseDI CCNNGG 4 cut(s) 46, 70, 100, 262
BseGI GGATG 3 cut(s) 80, 505, 525
BseLI CCNNNNNNNGG 2 cut(s) 496, 569
BseRI GAGGAG 2 cut(s) 171, 211
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 35, 261
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 7 cut(s) 32, 48, 61, 88, 292, 311, 361
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 496, 569
BsmFI GGGAC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 2 cut(s) 35, 261
Bsp119I TTCGAA 2 cut(s) 254, 281
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 5 cut(s) 55, 226, 400, 468, 502
BspACI CCGC 1 cut(s) 111
BspANI GGCC 2 cut(s) 35, 261
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 44, 65
BspPI GGATC 1 cut(s) 408
BspT104I TTCGAA 2 cut(s) 254, 281
BsrFI RCCGGY 2 cut(s) 31, 291
BssAI RCCGGY 2 cut(s) 31, 291
BssECI CCNNGG 4 cut(s) 46, 70, 100, 262
BssMI GATC 5 cut(s) 55, 226, 400, 468, 502
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 3 cut(s) 148, 209, 278
BstBI TTCGAA 2 cut(s) 254, 281
BstC8I GCNNGC 2 cut(s) 83, 293
BstDEI CTNAG 3 cut(s) 149, 554, 600
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 3 cut(s) 80, 505, 525
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 5 cut(s) 58, 229, 403, 471, 505
BstMBI GATC 5 cut(s) 55, 226, 400, 468, 502
BstMWI GCNNNNNNNGC 3 cut(s) 32, 314, 366
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 46, 360
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 35, 261
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 80, 505, 525
Cac8I GCNNGC 2 cut(s) 83, 293
Cfr10I RCCGGY 2 cut(s) 31, 291
Cfr13I GGNCC 3 cut(s) 42, 104, 299
Csp6I GTAC 2 cut(s) 446, 494
CviAII CATG 2 cut(s) 37, 82
CviJI RGCY 8 cut(s) 35, 148, 161, 261, 295, 329, 553, 559
CviKI_1 RGCY 8 cut(s) 35, 148, 161, 261, 295, 329, 553, 559
CviQI GTAC 2 cut(s) 446, 494
DdeI CTNAG 3 cut(s) 149, 554, 600
DpnI GATC 5 cut(s) 57, 228, 402, 470, 504
DpnII GATC 5 cut(s) 55, 226, 400, 468, 502
EaeI YGGCCR 2 cut(s) 33, 259
Eam1104I CTCTTC 3 cut(s) 148, 209, 278
EarI CTCTTC 3 cut(s) 148, 209, 278
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 42, 104, 299
EcoO109I RGGNCCY 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 40, 85
FaiI YATR 4 cut(s) 38, 83, 438, 507
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 36, 81
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 79, 112
FokI GGATG 3 cut(s) 87, 512, 532
Fsp4HI GCNGC 2 cut(s) 79, 112
FspBI CTAG 2 cut(s) 330, 407
GluI GCNGC 2 cut(s) 79, 112
HaeIII GGCC 2 cut(s) 35, 261
HapII CCGG 7 cut(s) 32, 48, 61, 88, 292, 311, 361
Hin1II CATG 2 cut(s) 40, 85
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 18, 286, 584
HpaII CCGG 7 cut(s) 32, 48, 61, 88, 292, 311, 361
HphI GGTGA 2 cut(s) 21, 245
Hpy166II GTNNAC 2 cut(s) 343, 597
Hpy188I TCNGA 4 cut(s) 17, 177, 387, 431
Hpy188III TCNNGA 2 cut(s) 224, 472
Hpy8I GTNNAC 2 cut(s) 343, 597
Hpy99I CGWCG 3 cut(s) 134, 181, 431
HpyAV CCTTC 2 cut(s) 265, 328
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 81, 85, 249, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 314, 366
HpyF3I CTNAG 3 cut(s) 149, 554, 600
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 2 cut(s) 40, 85
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 55, 226, 400, 468, 502
LmnI GCTCC 4 cut(s) 140, 158, 198, 313
LpnPI CCDG 8 cut(s) 45, 61, 74, 101, 305, 324, 374, 482
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 35, 65
MaeI CTAG 2 cut(s) 330, 407
MaeII ACGT 1 cut(s) 546
MalI GATC 5 cut(s) 57, 228, 402, 470, 504
MboI GATC 5 cut(s) 55, 226, 400, 468, 502
MboII GAAGA 4 cut(s) 165, 226, 295, 395
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 4 cut(s) 134, 250, 433, 533
MlyI GAGTC 2 cut(s) 295, 578
MmeI TCCRAC 3 cut(s) 200, 371, 409
MnlI CCTC 7 cut(s) 16, 33, 95, 138, 149, 189, 229
MroNI GCCGGC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 1 cut(s) 549
MspI CCGG 7 cut(s) 32, 48, 61, 88, 292, 311, 361
MspR9I CCNGG 2 cut(s) 48, 362
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 32, 314, 366
NaeI GCCGGC 1 cut(s) 293
NciI CCSGG 2 cut(s) 48, 362
NdeII GATC 5 cut(s) 55, 226, 400, 468, 502
NgoMIV GCCGGC 1 cut(s) 291
NlaIII CATG 2 cut(s) 40, 85
NlaIV GGNNCC 2 cut(s) 44, 65
NspI RCATGY 1 cut(s) 85
NspV TTCGAA 2 cut(s) 254, 281
PaeI GCATGC 1 cut(s) 85
PctI GAATGC 1 cut(s) 187
PdiI GCCGGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 80, 113
PleI GAGTC 2 cut(s) 294, 578
PpsI GAGTC 2 cut(s) 294, 578
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 44, 65
PspPI GGNCC 3 cut(s) 42, 104, 299
PspPPI RGGWCCY 1 cut(s) 42
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 2 cut(s) 447, 495
RsaNI GTAC 2 cut(s) 446, 494
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 2 cut(s) 79, 112
Sau3AI GATC 5 cut(s) 55, 226, 400, 468, 502
Sau96I GGNCC 3 cut(s) 42, 104, 299
SchI GAGTC 2 cut(s) 295, 578
ScrFI CCNGG 2 cut(s) 48, 362
SduI GDGCHC 1 cut(s) 599
SetI ASST 9 cut(s) 8, 163, 207, 235, 240, 331, 357, 549, 555
SfaNI GCATC 2 cut(s) 35, 65
SfuI TTCGAA 2 cut(s) 254, 281
SinI GGWCC 3 cut(s) 42, 104, 299
SphI GCATGC 1 cut(s) 85
Sse9I AATT 4 cut(s) 134, 250, 433, 533
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 330, 407
StyD4I CCNGG 2 cut(s) 46, 360
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 549
TaqI TCGA 6 cut(s) 54, 132, 254, 281, 471, 587
TasI AATT 4 cut(s) 134, 250, 433, 533
TatI WGTACW 2 cut(s) 445, 493
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 536
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 3 cut(s) 42, 104, 299
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 330, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.