Rh1DG306200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000573
Physical Location & Seq
Reverse (-)
53328088 .. 53328372
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG306200.1

Sequence Viewer

Length: 285 bp
ATGGAGCCTGGGTTTTTCGGATTGTGCAGGTGGTGCTTGTCGACGGCTTCCATGACCTATGGCGGTGGGCATCTTCGGCAGGGAATCTCCTGGACCTATGACGGCGTGGTGGCCATGGCGGTTTTCCGGCAGATTGGTGGGGCGGCGGGGCTTTGGTGGTCTGGGTTGCTCGCGGGGACGACATGGCTATGGGGAATCTGCTCAGAACGTGGTGGCGGCGTCTGGGCGGTGTTTCTGCGCGGATCCGTGGGGGAGGTCGCGGCAGTCGTGGGTCGGGCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.93

Weight (kDa)

8.66

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 41
AccII CGCG 3 cut(s) 173, 240, 260
AciI CCGC 9 cut(s) 63, 119, 143, 146, 173, 216, 227, 240, 260
AclWI GGATC 2 cut(s) 237, 250
AcoI YGGCCR 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 219
AjnI CCWGG 2 cut(s) 7, 89
AlwI GGATC 2 cut(s) 237, 250
AoxI GGCC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 93
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 60, 118
BciT130I CCWGG 2 cut(s) 9, 91
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 3 cut(s) 144, 217, 261
BlsI GCNGC 3 cut(s) 145, 218, 262
Bme1390I CCNGG 2 cut(s) 9, 91
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 6, 244
BmrFI CCNGG 2 cut(s) 9, 91
BmsI GCATC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 8, 114, 246
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseBI CCWGG 2 cut(s) 9, 91
BseDI CCNNGG 3 cut(s) 8, 114, 246
BseMII CTCAG 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 3 cut(s) 173, 240, 260
BshFI GGCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 9 cut(s) 63, 119, 143, 146, 173, 216, 227, 240, 260
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 215
BspFNI CGCG 3 cut(s) 173, 240, 260
BspLI GGNNCC 2 cut(s) 6, 244
BspMI ACCTGC 1 cut(s) 18
BspPI GGATC 2 cut(s) 237, 250
BssECI CCNNGG 3 cut(s) 8, 114, 246
BssMI GATC 1 cut(s) 242
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 9, 91
BstACI GRCGYC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 2 cut(s) 114, 246
BstFNI CGCG 3 cut(s) 173, 240, 260
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 33, 76
BstNI CCWGG 2 cut(s) 9, 91
BstSCI CCNGG 2 cut(s) 7, 89
BstUI CGCG 3 cut(s) 173, 240, 260
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 114, 246
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 93
CseI GACGC 1 cut(s) 208
CviAII CATG 3 cut(s) 52, 115, 183
CviJI RGCY 5 cut(s) 7, 47, 113, 151, 187
CviKI_1 RGCY 5 cut(s) 7, 47, 113, 151, 187
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 7, 89
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 55, 118, 186
FaiI YATR 6 cut(s) 53, 60, 99, 116, 184, 190
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 51, 114, 182
FauI CCCGC 2 cut(s) 139, 166
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 144, 217, 261
Fsp4HI GCNGC 3 cut(s) 144, 217, 261
GlaI GCGC 1 cut(s) 239
GluI GCNGC 3 cut(s) 144, 217, 261
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 55, 118, 186
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 84, 195
HpaII CCGG 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 2 cut(s) 20, 205
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 76
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 55, 118, 186
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 13, 21, 65, 76, 103, 140, 147, 208
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 208
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 113
MnlI CCTC 1 cut(s) 247
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 9, 91
MvaI CCWGG 2 cut(s) 9, 91
MvnI CGCG 3 cut(s) 173, 240, 260
MwoI GCNNNNNNNGC 2 cut(s) 33, 76
NcoI CCATGG 1 cut(s) 114
NdeII GATC 1 cut(s) 242
NlaIII CATG 3 cut(s) 55, 118, 186
NlaIV GGNNCC 2 cut(s) 6, 244
PaqCI CACCTGC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 2 cut(s) 84, 195
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 145, 218, 262
Psp6I CCWGG 2 cut(s) 7, 89
PspGI CCWGG 2 cut(s) 7, 89
PspN4I GGNNCC 2 cut(s) 6, 244
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 187
SalI GTCGAC 1 cut(s) 40
SatI GCNGC 3 cut(s) 144, 217, 261
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 9, 91
SetI ASST 5 cut(s) 32, 59, 98, 211, 258
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 187
SsiI CCGC 9 cut(s) 63, 119, 143, 146, 173, 216, 227, 240, 260
StyD4I CCNGG 2 cut(s) 7, 89
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 41
TauI GCSGC 3 cut(s) 146, 219, 263
TfiI GAWTC 2 cut(s) 84, 195
TscAI CASTG 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.