pycom06g16070

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
20514341 .. 20515714
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16070.3

Sequence Viewer

Length: 660 bp
ATGGCGGCTCCTCCACCCCCACCGCCAGCCCCAGCGCAATCCTCCGCCCCGGCCCCAACAGGTCCTTCCGCCAGAAACCACGGCTACAGCAGAAAGCAGAAGTCACTCGGCCTATTGTGCTCCAATTTCCTCGGCCTCTACAACCGCGACGGCGTGACTTCAATCGGCCTCGACGACGCCGCTTCACGATTAGGTGTAGAGAGGCGGCGGATCTACGATATTGTCAACGTCTTGGAGAGCGTTGGGGTTCTTGCTCGAAAGGCGAAGAACCAGTATTCTTGGAAAGGATTTAAGGCGATTCCTAGTGCCCTACAAGAGCTAAGGGAAGAGGGTCTGAGAGAGAATATTTGTAACTTTGACGGCAACGAAGATCCAAAGGGTTTGCAAATTTCAGATGATGAGGATGATGTAGAAAGATGTGGGAGTCAGCAGACTGAGAACTCGAACACTAATCTTAATCTTAAACCTATGAACCCAAAATCAGATAATAGAAGGGAAAAGTCGCTGGCACTTCTTACGCAGAATTTTGTGAAGCTCTTTGTGTGCTCAAATGTTGAAATGATCTCCCTTGACGAAGCTGCTAAATTACTGCTTGGTGATGCACACAATGCATCAGTGATGAGAAGTAAGAAATTTGTACTTGGTTTTGTTTATTCCTGA

Protein Analysis

220

Amino Acids

24.01

Weight (kDa)

8.31

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 8 cut(s) 5, 23, 45, 69, 145, 180, 205, 208
AclWI GGATC 2 cut(s) 218, 365
AcsI RAATTY 3 cut(s) 387, 523, 632
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 639
AgsI TTSAA 2 cut(s) 162, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 3 cut(s) 319, 535, 578
AluI AGCT 3 cut(s) 319, 535, 578
Alw21I GWGCWC 2 cut(s) 122, 548
AlwI GGATC 2 cut(s) 218, 365
AoxI GGCC 4 cut(s) 51, 109, 133, 166
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 3 cut(s) 387, 523, 632
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 52, 62
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 608
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 310
Bbv12I GWGCWC 2 cut(s) 122, 548
BbvI GCAGC 1 cut(s) 565
BceAI ACGGC 3 cut(s) 97, 166, 376
BcnI CCSGG 1 cut(s) 50
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 4 cut(s) 6, 180, 206, 579
BlsI GCNGC 4 cut(s) 7, 181, 207, 580
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 52, 62
BmiI GGNNCC 2 cut(s) 9, 54
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 589, 620
Bpu10I CCTNAGC 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 48, 79, 130
Bse1I ACTGG 1 cut(s) 271
BseDI CCNNGG 3 cut(s) 48, 79, 130
BseGI GGATG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 326, 426
BseNI ACTGG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 4 cut(s) 53, 111, 135, 168
BsiHKAI GWGCWC 2 cut(s) 122, 548
BsiSI CCGG 1 cut(s) 50
BsnI GGCC 4 cut(s) 53, 111, 135, 168
Bsp1286I GDGCHC 3 cut(s) 122, 310, 548
Bsp143I GATC 3 cut(s) 210, 370, 561
BspACI CCGC 8 cut(s) 5, 23, 45, 69, 145, 180, 205, 208
BspANI GGCC 4 cut(s) 53, 111, 135, 168
BspCNI CTCAG 2 cut(s) 327, 427
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 9, 54
BspPI GGATC 2 cut(s) 218, 365
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 48, 79, 130
BssMI GATC 3 cut(s) 210, 370, 561
BssNI GRCGYC 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 27, 507
BstDEI CTNAG 3 cut(s) 320, 335, 435
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 213, 373, 564
BstMBI GATC 3 cut(s) 210, 370, 561
BstMWI GCNNNNNNNGC 3 cut(s) 117, 260, 608
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 565
BstX2I RGATCY 2 cut(s) 210, 370
BstYI RGATCY 2 cut(s) 210, 370
BsuRI GGCC 4 cut(s) 53, 111, 135, 168
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 2 cut(s) 27, 507
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 52, 62
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 638
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 3 cut(s) 320, 335, 435
DpnI GATC 3 cut(s) 212, 372, 563
DpnII GATC 3 cut(s) 210, 370, 561
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 3 cut(s) 34, 58, 223
Eco47I GGWCC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 613
FaiI YATR 1 cut(s) 470
Fnu4HI GCNGC 4 cut(s) 6, 180, 206, 579
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 4 cut(s) 6, 180, 206, 579
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 36
GluI GCNGC 4 cut(s) 6, 180, 206, 579
GsaI CCCAGC 1 cut(s) 35
HaeIII GGCC 4 cut(s) 53, 111, 135, 168
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 298, 424
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 3 cut(s) 336, 394, 484
Hpy188III TCNNGA 2 cut(s) 186, 657
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 152, 176, 179
HpyAV CCTTC 2 cut(s) 75, 486
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 385, 602, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 260, 608
HpyF3I CTNAG 3 cut(s) 320, 335, 435
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 210, 370, 561
LmnI GCTCC 2 cut(s) 13, 125
LpnPI CCDG 7 cut(s) 39, 45, 45, 63, 85, 284, 491
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 2 cut(s) 589, 620
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 102, 154, 350
MalI GATC 3 cut(s) 212, 372, 563
MboI GATC 3 cut(s) 210, 370, 561
MboII GAAGA 3 cut(s) 277, 338, 380
MflI RGATCY 2 cut(s) 210, 370
MhlI GDGCHC 3 cut(s) 122, 310, 548
MluCI AATT 5 cut(s) 124, 387, 523, 584, 632
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 8 cut(s) 21, 52, 140, 146, 179, 195, 322, 394
Mph1103I ATGCAT 1 cut(s) 613
MseI TTAA 3 cut(s) 291, 456, 462
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 117, 260, 608
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 210, 370, 561
NlaIV GGNNCC 2 cut(s) 9, 54
NmeAIII GCCGAG 2 cut(s) 87, 111
NmuCI GTSAC 2 cut(s) 102, 154
NsiI ATGCAT 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 4 cut(s) 7, 181, 207, 580
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 9, 54
PspPI GGNCC 2 cut(s) 52, 62
PspPPI RGGWCCY 1 cut(s) 62
PsuI RGATCY 2 cut(s) 210, 370
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
SaqAI TTAA 3 cut(s) 291, 456, 462
SatI GCNGC 4 cut(s) 6, 180, 206, 579
Sau3AI GATC 3 cut(s) 210, 370, 561
Sau96I GGNCC 2 cut(s) 52, 62
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 3 cut(s) 122, 310, 548
SetI ASST 7 cut(s) 64, 196, 231, 321, 469, 537, 580
SfaNI GCATC 2 cut(s) 589, 620
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 62
Sse9I AATT 5 cut(s) 124, 387, 523, 584, 632
SsiI CCGC 8 cut(s) 5, 23, 45, 69, 145, 180, 205, 208
SspI AATATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 171, 256, 443
TasI AATT 5 cut(s) 124, 387, 523, 584, 632
TatI WGTACW 1 cut(s) 637
TauI GCSGC 3 cut(s) 8, 182, 208
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 3 cut(s) 291, 456, 462
Tru9I TTAA 3 cut(s) 291, 456, 462
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 2 cut(s) 102, 154
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 2 cut(s) 102, 154
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 1 cut(s) 621
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 3 cut(s) 387, 523, 632
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.