Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

63213472 .. 63214251

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0499800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAAGACAAACTCGGCAACCAATGACTCCACCAACTCTGCAACTGTTGGACCCACAAATCCAGCACTCTCCAGATCTACAAATTCAGCAACCTCTGGATCCACAAATCCAACAACGGATCGAGGATGAAGGAAGCAACACAGCAGCCGGGAGTAGTGCCATCACGCCAATCAGGCCGACCAGTATCCGGTGGGCTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTATGACAAGGCCTTTAAATACCCAACCCCAAAGAAAATTCAAGAGATCTGTCTCCATCTGAAACAGTATGGACAGGTTGAGGGCATGAACGTTTATTTTTGGTTCCAGAACCTCAGAGCTCGAGACAGACAGAAGATGAGGTTAATTCAGAACATTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGATCCACTAGTTCTACTGATGATGGTGGGTTTATTGATGTCAATTTTGGGCCACGGGTTGACTGCAGTGTTGACCGGTATTCCTCCTCACCCTTCAACACTAATACTAGTACTTACTCCTTTGGCACAAAAGAAGGACAAACTTTCATGGAACAGCGAGGGGAAGATCACCAGGAGATTGAAACTCTTCCTCTGTTCCCCTTGCACGGTGAGGACATCTTTAGCGACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTGTTCCGGTGGCTCGGGCGGCTACAACGGTGGCTCTCACGTTTTTCTTGAGCTCAGCCTCAACCCATCCGAAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

259

Amino Acids

28.96

Weight (kDa)

4.96

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	64 - 123	1.8e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	402, 678, 708
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	6 cut(s)	95, 108, 128, 412, 420, 433
AcsI	RAATTY	2 cut(s)	84, 273
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	189, 629
AgeI	ACCGGT	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	278, 520, 605
AhlI	ACTAGT	2 cut(s)	431, 530
AjnI	CCWGG	2 cut(s)	225, 594
AluBI	AGCT	4 cut(s)	232, 356, 742, 764
AluI	AGCT	4 cut(s)	232, 356, 742, 764
Alw21I	GWGCWC	2 cut(s)	358, 744
Alw26I	GTCTC	2 cut(s)	293, 354
AlwI	GGATC	6 cut(s)	95, 108, 128, 412, 420, 433
Ama87I	CYCGRG	2 cut(s)	357, 703
AoxI	GGCC	3 cut(s)	176, 246, 473
ApeKI	GCWGC	2 cut(s)	146, 764
ApoI	RAATTY	2 cut(s)	84, 273
AsiGI	ACCGGT	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	52, 473
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	504, 584, 644
AvaI	CYCGRG	2 cut(s)	357, 703
AvaII	GGWCC	1 cut(s)	52
BamHI	GGATCC	2 cut(s)	100, 425
BanII	GRGCYC	3 cut(s)	199, 358, 744
Bbv12I	GWGCWC	2 cut(s)	358, 744
BbvI	GCAGC	2 cut(s)	158, 751
BccI	CCATC	4 cut(s)	170, 300, 440, 763
BciT130I	CCWGG	2 cut(s)	227, 596
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	293, 354
BcuI	ACTAGT	2 cut(s)	431, 530
BfaI	CTAG	2 cut(s)	432, 531
BfmI	CTRYAG	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	175
BglII	AGATCT	2 cut(s)	76, 282
BisI	GCNGC	4 cut(s)	147, 679, 709, 765
BlpI	GCTNAGC	1 cut(s)	743
BlsI	GCNGC	4 cut(s)	148, 680, 710, 766
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	3 cut(s)	151, 227, 596
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	2 cut(s)	357, 703
BmgT120I	GGNCC	2 cut(s)	52, 473
BmiI	GGNNCC	5 cut(s)	54, 102, 198, 341, 427
BmrFI	CCNGG	3 cut(s)	151, 227, 596
BpmI	CTGGAG	2 cut(s)	57, 209
Bpu1102I	GCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	476, 666
BsaWI	WCCGGW	3 cut(s)	189, 498, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 629
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	227, 596
BseDI	CCNNGG	2 cut(s)	476, 666
BseGI	GGATG	2 cut(s)	133, 755
BseLI	CCNNNNNNNGG	2 cut(s)	189, 629
BseMII	CTCAG	2 cut(s)	364, 757
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	158, 751
BshFI	GGCC	3 cut(s)	178, 248, 475
BshTI	ACCGGT	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	358, 744
BsiHKCI	CYCGRG	2 cut(s)	357, 703
BsiSI	CCGG	4 cut(s)	150, 190, 499, 696
BslI	CCNNNNNNNGG	2 cut(s)	189, 629
BsmAI	GTCTC	2 cut(s)	293, 354
BsnI	GGCC	3 cut(s)	178, 248, 475
BsoBI	CYCGRG	2 cut(s)	357, 703
Bsp1286I	GDGCHC	3 cut(s)	199, 358, 744
Bsp143I	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
Bsp1720I	GCTNAGC	1 cut(s)	743
BspACI	CCGC	3 cut(s)	402, 678, 708
BspANI	GGCC	3 cut(s)	178, 248, 475
BspCNI	CTCAG	2 cut(s)	363, 756
BspLI	GGNNCC	5 cut(s)	54, 102, 198, 341, 427
BspMAI	CTGCAG	1 cut(s)	491
BspPI	GGATC	6 cut(s)	95, 108, 128, 412, 420, 433
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	476, 666
BssMI	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
Bst2UI	CCWGG	2 cut(s)	227, 596
Bst4CI	ACNGT	5 cut(s)	48, 303, 632, 692, 719
Bst6I	CTCTTC	1 cut(s)	615
BstDEI	CTNAG	4 cut(s)	215, 350, 743, 777
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	133, 755
BstKTI	GATC	9 cut(s)	79, 103, 123, 211, 285, 407, 415, 428, 592
BstMAI	GTCTC	2 cut(s)	293, 354
BstMBI	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 684, 708, 773
BstNI	CCWGG	2 cut(s)	227, 596
BstSCI	CCNGG	3 cut(s)	149, 225, 594
BstSFI	CTRYAG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	158, 751
BstX2I	RGATCY	5 cut(s)	76, 100, 282, 404, 425
BstYI	RGATCY	5 cut(s)	76, 100, 282, 404, 425
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	178, 248, 475
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	133, 755
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	52, 473
Csp6I	GTAC	1 cut(s)	534
CspAI	ACCGGT	1 cut(s)	498
CviAII	CATG	2 cut(s)	322, 571
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	4 cut(s)	215, 350, 743, 777
DpnI	GATC	9 cut(s)	78, 102, 122, 210, 284, 406, 414, 427, 591
DpnII	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	417
Ecl136II	GAGCTC	2 cut(s)	356, 742
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	3 cut(s)	199, 358, 744
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	356, 742
Eco88I	CYCGRG	2 cut(s)	357, 703
EcoICRI	GAGCTC	2 cut(s)	356, 742
EcoRII	CCWGG	2 cut(s)	225, 594
EcoT38I	GRGCYC	3 cut(s)	199, 358, 744
FaeI	CATG	2 cut(s)	325, 574
FaiI	YATR	5 cut(s)	240, 306, 323, 572, 684
FatI	CATG	2 cut(s)	321, 570
Fnu4HI	GCNGC	4 cut(s)	147, 679, 709, 765
FokI	GGATG	2 cut(s)	140, 742
FriOI	GRGCYC	3 cut(s)	199, 358, 744
Fsp4HI	GCNGC	4 cut(s)	147, 679, 709, 765
FspBI	CTAG	2 cut(s)	432, 531
GluI	GCNGC	4 cut(s)	147, 679, 709, 765
GsuI	CTGGAG	2 cut(s)	57, 209
HaeIII	GGCC	3 cut(s)	178, 248, 475
HapII	CCGG	4 cut(s)	150, 190, 499, 696
Hin1II	CATG	2 cut(s)	325, 574
HincII	GTYRAC	2 cut(s)	484, 496
HindII	GTYRAC	2 cut(s)	484, 496
HinfI	GANTC	2 cut(s)	28, 219
HpaII	CCGG	4 cut(s)	150, 190, 499, 696
HphI	GGTGA	3 cut(s)	504, 584, 644
Hpy166II	GTNNAC	2 cut(s)	484, 496
Hpy188I	TCNGA	5 cut(s)	297, 353, 387, 667, 760
Hpy188III	TCNNGA	7 cut(s)	74, 98, 278, 343, 359, 410, 737
Hpy8I	GTNNAC	2 cut(s)	484, 496
HpyAV	CCTTC	3 cut(s)	125, 526, 551
HpyCH4III	ACNGT	5 cut(s)	48, 303, 632, 692, 719
HpyCH4IV	ACGT	2 cut(s)	327, 729
HpyCH4V	TGCA	3 cut(s)	43, 489, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 684, 708, 773
HpyF3I	CTNAG	4 cut(s)	215, 350, 743, 777
HpySE526I	ACGT	2 cut(s)	327, 729
Hsp92II	CATG	2 cut(s)	325, 574
Kzo9I	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
LmnI	GCTCC	2 cut(s)	202, 229
Lsp1109I	GCAGC	2 cut(s)	158, 751
MaeI	CTAG	2 cut(s)	432, 531
MaeII	ACGT	2 cut(s)	327, 729
MalI	GATC	9 cut(s)	78, 102, 122, 210, 284, 406, 414, 427, 591
MboI	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
MboII	GAAGA	3 cut(s)	382, 599, 602
MflI	RGATCY	5 cut(s)	76, 100, 282, 404, 425
MhlI	GDGCHC	3 cut(s)	199, 358, 744
MluCI	AATT	4 cut(s)	84, 273, 381, 466
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	2 cut(s)	30, 136
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	2 cut(s)	252, 380
MspI	CCGG	4 cut(s)	150, 190, 499, 696
MspR9I	CCNGG	3 cut(s)	151, 227, 596
MvaI	CCWGG	2 cut(s)	227, 596
MwoI	GCNNNNNNNGC	4 cut(s)	175, 684, 708, 773
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
NlaIII	CATG	2 cut(s)	325, 574
NlaIV	GGNNCC	5 cut(s)	54, 102, 198, 341, 427
PaeR7I	CTCGAG	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	219
PfoI	TCCNGGA	1 cut(s)	225
PinAI	ACCGGT	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	148, 680, 710, 766
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp124BI	GAGCTC	2 cut(s)	358, 744
Psp1406I	AACGTT	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	225, 594
PspGI	CCWGG	2 cut(s)	225, 594
PspN4I	GGNNCC	5 cut(s)	54, 102, 198, 341, 427
PspPI	GGNCC	2 cut(s)	52, 473
PstI	CTGCAG	1 cut(s)	491
PsuI	RGATCY	5 cut(s)	76, 100, 282, 404, 425
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SacI	GAGCTC	2 cut(s)	358, 744
SaqAI	TTAA	2 cut(s)	252, 380
SatI	GCNGC	4 cut(s)	147, 679, 709, 765
Sau3AI	GATC	9 cut(s)	76, 100, 120, 208, 282, 404, 412, 425, 589
Sau96I	GGNCC	2 cut(s)	52, 473
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	3 cut(s)	151, 227, 596
SduI	GDGCHC	3 cut(s)	199, 358, 744
SfcI	CTRYAG	1 cut(s)	487
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	357, 737
SmoI	CTYRAG	2 cut(s)	357, 737
SpeI	ACTAGT	2 cut(s)	431, 530
Sse9I	AATT	4 cut(s)	84, 273, 381, 466
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	3 cut(s)	402, 678, 708
SspMI	CTAG	2 cut(s)	432, 531
SstI	GAGCTC	2 cut(s)	358, 744
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	149, 225, 594
TaaI	ACNGT	5 cut(s)	48, 303, 632, 692, 719
TaiI	ACGT	2 cut(s)	330, 732
TaqI	TCGA	3 cut(s)	123, 358, 411
TasI	AATT	4 cut(s)	84, 273, 381, 466
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	2 cut(s)	681, 711
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	252, 380
Tru9I	TTAA	2 cut(s)	252, 380
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	2 cut(s)	146, 764
TspDTI	ATGAA	3 cut(s)	144, 338, 559
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	84, 273
XhoI	CTCGAG	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	2 cut(s)	432, 531
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.