Rroxscaffold_7G00170280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000573
Physical Location & Seq
Forward (+)
10734512 .. 10738149
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170280.1

Sequence Viewer

Length: 300 bp
ATGACTACCGGAAAGCTATCCAAGTTGGAGCACTTTGAAACAGATGAAAAGCTGGTTGTTGGTATGGTGGAGGGAACAGTTTTGGTTGTTGATGCGGGGAAGGTTCGCTTGCGTAGACCAAGTTGTGCTTGCCAAAGCCTTAAGATACGGGCTGCGTCCTATCCTCCTTCTAAAAAAGTTGATCAGCCTGCAGTTTTGAAGAGATGTGCGATGAAGATAAGAGTCGAGTATTTGATCCTTTCGCAAATCTCGGTGCTACGAGGAGCACTTGGATTTTCTGTGCTATGTGCTTCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.85

Weight (kDa)

9.83

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 229
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 38, 199
AluBI AGCT 2 cut(s) 16, 52
AluI AGCT 2 cut(s) 16, 52
Alw21I GWGCWC 2 cut(s) 33, 268
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 33, 268
BbvI GCAGC 1 cut(s) 139
BclI TGATCA 1 cut(s) 181
BfmI CTRYAG 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmsI GCATC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 33, 268
BsiSI CCGG 1 cut(s) 9
Bsp1286I GDGCHC 2 cut(s) 33, 268
Bsp143I GATC 2 cut(s) 181, 234
BspACI CCGC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 140
BssMI GATC 2 cut(s) 181, 234
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 110, 130, 189
BstKTI GATC 2 cut(s) 184, 237
BstMBI GATC 2 cut(s) 181, 234
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 110, 130, 189
CseI GACGC 1 cut(s) 144
CviJI RGCY 5 cut(s) 16, 52, 138, 152, 187
CviKI_1 RGCY 5 cut(s) 16, 52, 138, 152, 187
DpnI GATC 2 cut(s) 183, 236
DpnII GATC 2 cut(s) 181, 234
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
FaiI YATR 2 cut(s) 65, 286
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 112, 144
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 94, 177
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 234
LmnI GCTCC 2 cut(s) 28, 263
LpnPI CCDG 3 cut(s) 22, 38, 201
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 82
MalI GATC 2 cut(s) 183, 236
MboI GATC 2 cut(s) 181, 234
MboII GAAGA 2 cut(s) 211, 226
MhlI GDGCHC 2 cut(s) 33, 268
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 3 cut(s) 64, 174, 254
MseI TTAA 1 cut(s) 141
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 1 cut(s) 9
NdeII GATC 2 cut(s) 181, 234
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 193
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 181, 234
SchI GAGTC 1 cut(s) 231
SduI GDGCHC 2 cut(s) 33, 268
SetI ASST 3 cut(s) 18, 54, 105
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SsiI CCGC 1 cut(s) 95
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 225
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 60, 227
Vha464I CTTAAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.