Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003547.1

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Forward (+)

21336 .. 22079

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003547.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggccacttcctcctacctggaaaccccccagacgtcaagaaagtccaagaacacgtacacgtggaacggtttcggcgcggtccctaacgccttgaaggagctcagagaagaaggcctggatctgactccgatcccggtgacctgcaataacaacaacaacaatcccttggatgagaccaagagggaaaagtctctggcgcagaatttcgtgaagctgttcgtgtgtaccggatcggaatcaaaatcgatttctattgatgaagctgcaaaattactgcttggagtaggggatgcacagaatatatcggtgatgaggacgaaggtgaggaggatctatgacattgcgaatgtgttgtcgtcagtgaatttgattgagaagactcatacggcgaatacagggaagctagcgtacaggttgttgggcctgaatgggagaagagatggtttgaatttgaattcggagccgaatttggagcaggctatgaagaggagctttgggacagatctaatggatgcgagtagtaagaggagcaaggttgtggagaagagagttcaagatcagggtgaggttgagaactggaattcggatggctgtggggcgaaggagagttcgaagagctaccagtttggtcctttcgctccgggggcgttccaagagctaggaagggtgttgacatcaacaaggtttgctgggagagtcttggggcttattatcagcctcagtatcagaaccaagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

247

Amino Acids

27.18

Weight (kDa)

9.42

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	152
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	4 cut(s)	127, 129, 241, 341
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	6 cut(s)	205, 367, 451, 457, 469, 583
AcvI	CACGTG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	3 cut(s)	59, 229, 413
AflIII	ACRYGT	2 cut(s)	54, 60
AgsI	TTSAA	4 cut(s)	97, 451, 457, 557
AjnI	CCWGG	2 cut(s)	18, 117
AluBI	AGCT	7 cut(s)	103, 217, 266, 406, 495, 621, 661
AluI	AGCT	7 cut(s)	103, 217, 266, 406, 495, 621, 661
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	170, 198
AlwI	GGATC	4 cut(s)	127, 129, 241, 341
AoxI	GGCC	3 cut(s)	3, 115, 424
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	6 cut(s)	205, 367, 451, 457, 469, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
Asp700I	GAANNNNTTC	2 cut(s)	71, 218
AspLEI	GCGC	2 cut(s)	80, 202
AspS9I	GGNCC	3 cut(s)	82, 424, 632
AsuC2I	CCSGG	2 cut(s)	137, 645
AsuHPI	GGTGA	4 cut(s)	151, 322, 337, 578
AsuII	TTCGAA	1 cut(s)	614
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	82, 632
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbrPI	CACGTG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	437, 584
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	2 cut(s)	20, 119
BcnI	CCSGG	2 cut(s)	137, 645
BcoDI	GTCTC	2 cut(s)	170, 198
BfaI	CTAG	2 cut(s)	407, 662
BfuAI	ACCTGC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	4 cut(s)	20, 119, 137, 645
Bme18I	GGWCC	2 cut(s)	82, 632
BmgT120I	GGNCC	3 cut(s)	82, 424, 632
BmiI	GGNNCC	2 cut(s)	84, 465
BmrFI	CCNGG	4 cut(s)	20, 119, 137, 645
BmsI	GCATC	2 cut(s)	283, 505
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	614
BpuMI	CCSGG	2 cut(s)	137, 645
Bsa29I	ATCGAT	1 cut(s)	248
BsaAI	YACGTR	2 cut(s)	57, 63
BsaBI	GATNNNNATC	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	168, 644
BsaWI	WCCGGW	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	584, 625
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	20, 119
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	168, 644
BseGI	GGATG	4 cut(s)	178, 298, 520, 595
BseJI	GATNNNNATC	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	118, 736
BseNI	ACTGG	2 cut(s)	584, 625
BseRI	GAGGAG	3 cut(s)	343, 505, 544
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	5, 117, 426
BshVI	ATCGAT	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	137, 231, 644
BslFI	GGGAC	2 cut(s)	68, 514
BsmAI	GTCTC	2 cut(s)	170, 198
BsmFI	GGGAC	2 cut(s)	68, 514
BsnI	GGCC	3 cut(s)	5, 117, 426
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	5, 117, 426
BspCNI	CTCAG	2 cut(s)	117, 735
BspDI	ATCGAT	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	84, 465
BspMI	ACCTGC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	4 cut(s)	127, 129, 241, 341
BspQI	GCTCTTC	1 cut(s)	611
BspT104I	TTCGAA	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	584, 625
BssECI	CCNNGG	2 cut(s)	168, 644
BssMI	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	20, 119
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	433, 482, 542, 611
BstACI	GRCGYC	1 cut(s)	35
BstBAI	YACGTR	2 cut(s)	57, 63
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	408, 480
BstDEI	CTNAG	2 cut(s)	104, 722
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	4 cut(s)	178, 298, 520, 595
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	80, 202
BstKTI	GATC	6 cut(s)	124, 135, 236, 336, 508, 562
BstMAI	GTCTC	2 cut(s)	170, 198
BstMBI	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	2 cut(s)	20, 119
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	4 cut(s)	18, 117, 135, 643
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	3 cut(s)	121, 333, 505
BstYI	RGATCY	3 cut(s)	121, 333, 505
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	5, 117, 426
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	4 cut(s)	178, 298, 520, 595
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	408, 480
CfoI	GCGC	2 cut(s)	80, 202
Cfr13I	GGNCC	3 cut(s)	82, 424, 632
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	58, 228, 412
CviQI	GTAC	3 cut(s)	58, 228, 412
DdeI	CTNAG	2 cut(s)	104, 722
DpnI	GATC	6 cut(s)	123, 134, 235, 335, 507, 561
DpnII	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	433, 482, 542, 611
EarI	CTCTTC	4 cut(s)	433, 482, 542, 611
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	82, 632
Eco53kI	GAGCTC	1 cut(s)	103
Eco72I	CACGTG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	139
EcoRI	GAATTC	2 cut(s)	457, 583
EcoRII	CCWGG	2 cut(s)	18, 117
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	168
FaiI	YATR	4 cut(s)	305, 339, 387, 485
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	68, 514
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	4 cut(s)	185, 305, 527, 602
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	407, 662
GlaI	GCGC	2 cut(s)	79, 201
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	5, 117, 426
HapII	CCGG	3 cut(s)	137, 231, 644
HhaI	GCGC	2 cut(s)	80, 202
Hin1I	GRCGYC	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	78, 200
HinP1I	GCGC	2 cut(s)	78, 200
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	4 cut(s)	127, 239, 382, 699
HpaII	CCGG	3 cut(s)	137, 231, 644
HphI	GGTGA	4 cut(s)	151, 322, 337, 578
Hpy166II	GTNNAC	3 cut(s)	60, 228, 675
Hpy188I	TCNGA	7 cut(s)	107, 126, 132, 238, 463, 589, 731
Hpy188III	TCNNGA	3 cut(s)	39, 211, 557
Hpy8I	GTNNAC	3 cut(s)	60, 228, 675
HpyAV	CCTTC	5 cut(s)	91, 107, 316, 598, 660
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	3 cut(s)	35, 56, 62
HpyCH4V	TGCA	3 cut(s)	147, 269, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	2 cut(s)	104, 722
HpySE526I	ACGT	3 cut(s)	35, 56, 62
Hsp92I	GRCGYC	1 cut(s)	35
HspAI	GCGC	2 cut(s)	78, 200
Kzo9I	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
LguI	GCTCTTC	1 cut(s)	611
LmnI	GCTCC	6 cut(s)	100, 463, 475, 492, 531, 646
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	283, 505
MaeI	CTAG	2 cut(s)	407, 662
MaeII	ACGT	3 cut(s)	35, 56, 62
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	6 cut(s)	123, 134, 235, 335, 507, 561
MboI	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
MboII	GAAGA	6 cut(s)	122, 391, 450, 499, 559, 628
MflI	RGATCY	3 cut(s)	121, 333, 505
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	205, 272, 367, 451, 457, 469, 583
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	121, 376, 708
MnlI	CCTC	9 cut(s)	22, 177, 309, 321, 324, 483, 522, 562, 731
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	71, 218
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	137, 231, 644
MspR9I	CCNGG	4 cut(s)	20, 119, 137, 645
MvaI	CCWGG	2 cut(s)	20, 119
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	647
NciI	CCSGG	2 cut(s)	137, 645
NdeII	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
NheI	GCTAGC	1 cut(s)	406
NlaIV	GGNNCC	2 cut(s)	84, 465
NmuCI	GTSAC	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	614
PceI	AGGCCT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	611
PdmI	GAANNNNTTC	2 cut(s)	71, 218
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	3 cut(s)	121, 376, 707
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
PpsI	GAGTC	3 cut(s)	121, 376, 707
Ppu21I	YACGTR	2 cut(s)	57, 63
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	18, 117
PspCI	CACGTG	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	18, 117
PspN4I	GGNNCC	2 cut(s)	84, 465
PspPI	GGNCC	3 cut(s)	82, 424, 632
PsuI	RGATCY	3 cut(s)	121, 333, 505
RsaI	GTAC	3 cut(s)	59, 229, 413
RsaNI	GTAC	3 cut(s)	58, 228, 412
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	611
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	6 cut(s)	121, 132, 233, 333, 505, 559
Sau96I	GGNCC	3 cut(s)	82, 424, 632
SchI	GAGTC	3 cut(s)	121, 376, 708
ScrFI	CCNGG	4 cut(s)	20, 119, 137, 645
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	283, 505
SfuI	TTCGAA	1 cut(s)	614
SinI	GGWCC	2 cut(s)	82, 632
Sse9I	AATT	7 cut(s)	205, 272, 367, 451, 457, 469, 583
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	2 cut(s)	407, 662
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	18, 117, 135, 643
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	3 cut(s)	38, 59, 65
TaqI	TCGA	2 cut(s)	248, 614
TasI	AATT	7 cut(s)	205, 272, 367, 451, 457, 469, 583
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	276, 500
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	82, 632
XapI	RAATTY	6 cut(s)	205, 367, 451, 457, 469, 583
XmnI	GAANNNNTTC	2 cut(s)	71, 218
XspI	CTAG	2 cut(s)	407, 662
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.