Rmu_sc0007546.1_g000012

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007546.1
Physical Location & Seq
Forward (+)
66751 .. 67611
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007546.1_g000012.1.cds

Sequence Viewer

Length: 861 bp
atggatttgtggatttgtgagctctctctaaaccatggccacttcctcctacctggaaacccccagacgtcaagaaagtccaagaacacgtacacgtggaagggtttcggcgcggtccctaatgccctgaaagagctcaaagaagaatgccgggatctgattcctatctcggcggcctgcaataacaacaacaacaatcccctggatgagaccaagagggaaaagtctctggcgcttctggcgcagaatttcgtgaagctgttcgtgtgtaccggatcgaaatcagaatcgatttctcttgatgaagctgcaaaattactgcttggagtaggggatgcacagaatgtatcggtgatgaggacgaaggtgaggaggatctatgacattgcgaatgtgttgtcgtcggtgaatttgattgagaagactcatactgcggatacagggaagtcggcgtacaggtggttggggctgaatgggagaagagacggtttgaatttgaatttggagccgaatttggagcaggctaagaagaggagctttgggatagatctgacgaatgcgagtagtaagaggagcaaggttgtggagaagagagttcaagatcaaggtgaggttgagaactgcaattcggatggctgtggggcgaatgagagttcgaagagctaccagtttggtcctttcgctccggtggaggttctaagagctaggaagggtgttgacattaacaaggtttgctgggagagtcttggggcttattatcggcctcagtatcagaaccaagtgatgaaggagctgttttcacattatagcgaagcgtggatgttgtggaactctcaagttgctgagaagaatccaatttag

Protein Analysis

286

Amino Acids

32.06

Weight (kDa)

8.86

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 113, 173, 434
AclWI GGATC 3 cut(s) 162, 283, 383
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 5 cut(s) 247, 409, 493, 499, 511
AcvI CACGTG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 3 cut(s) 92, 271, 455
AflIII ACRYGT 2 cut(s) 87, 93
AgsI TTSAA 3 cut(s) 493, 499, 599
AjnI CCWGG 2 cut(s) 52, 201
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 8 cut(s) 22, 136, 259, 308, 537, 663, 704, 793
AluI AGCT 8 cut(s) 22, 136, 259, 308, 537, 663, 704, 793
Alw21I GWGCWC 2 cut(s) 24, 138
Alw26I GTCTC 3 cut(s) 203, 231, 477
AlwI GGATC 3 cut(s) 162, 283, 383
AoxI GGCC 3 cut(s) 37, 174, 761
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 5 cut(s) 247, 409, 493, 499, 511
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
Asp700I GAANNNNTTC 2 cut(s) 104, 260
AspLEI GCGC 3 cut(s) 113, 235, 244
AspS9I GGNCC 2 cut(s) 115, 674
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 364, 379, 418, 620
AsuII TTCGAA 1 cut(s) 656
AvaII GGWCC 2 cut(s) 115, 674
BalI TGGCCA 1 cut(s) 39
BanII GRGCYC 2 cut(s) 24, 138
BarI GAAGNNNNNNTAC 2 cut(s) 437, 469
BbrPI CACGTG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 2 cut(s) 24, 138
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 626
BciT130I CCWGG 2 cut(s) 54, 203
BciVI GTATCC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 203, 231, 477
BfaI CTAG 1 cut(s) 705
BfoI RGCGCY 1 cut(s) 236
BfuI GTATCC 1 cut(s) 430
BglII AGATCT 1 cut(s) 547
BisI GCNGC 2 cut(s) 174, 309
BlsI GCNGC 2 cut(s) 175, 310
Bme1390I CCNGG 3 cut(s) 54, 152, 203
Bme18I GGWCC 2 cut(s) 115, 674
BmgT120I GGNCC 2 cut(s) 115, 674
BmiI GGNNCC 2 cut(s) 117, 507
BmrFI CCNGG 3 cut(s) 54, 152, 203
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 819
BpuMI CCSGG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 290
BsaAI YACGTR 2 cut(s) 90, 96
BsaBI GATNNNNATC 2 cut(s) 164, 280
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 34, 201
BsaWI WCCGGW 2 cut(s) 272, 685
Bse1I ACTGG 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 2 cut(s) 164, 280
BseBI CCWGG 2 cut(s) 54, 203
BseCI ATCGAT 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 34, 201
BseGI GGATG 4 cut(s) 211, 340, 637, 825
BseJI GATNNNNATC 2 cut(s) 164, 280
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 779, 834
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 3 cut(s) 385, 547, 586
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 39, 176, 763
BshVI ATCGAT 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 24, 138
BsiSI CCGG 3 cut(s) 151, 273, 686
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 3 cut(s) 203, 231, 477
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 152, 562
BsnI GGCC 3 cut(s) 39, 176, 763
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 24, 138
Bsp143I GATC 5 cut(s) 154, 275, 375, 547, 601
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 3 cut(s) 113, 173, 434
BspANI GGCC 3 cut(s) 39, 176, 763
BspCNI CTCAG 2 cut(s) 778, 835
BspDI ATCGAT 1 cut(s) 290
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 117, 507
BspPI GGATC 3 cut(s) 162, 283, 383
BspQI GCTCTTC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 34, 201
BssMI GATC 5 cut(s) 154, 275, 375, 547, 601
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 54, 203
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 4 cut(s) 475, 524, 584, 653
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 2 cut(s) 90, 96
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 2 cut(s) 178, 522
BstDEI CTNAG 4 cut(s) 525, 698, 765, 843
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 4 cut(s) 211, 340, 637, 825
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 3 cut(s) 113, 235, 244
BstKTI GATC 5 cut(s) 157, 278, 378, 550, 604
BstMAI GTCTC 3 cut(s) 203, 231, 477
BstMBI GATC 5 cut(s) 154, 275, 375, 547, 601
BstMWI GCNNNNNNNGC 2 cut(s) 239, 241
BstNI CCWGG 2 cut(s) 54, 203
BstSCI CCNGG 3 cut(s) 52, 150, 201
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 3 cut(s) 154, 375, 547
BstYI RGATCY 3 cut(s) 154, 375, 547
Bsu15I ATCGAT 1 cut(s) 290
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 39, 176, 763
BsuTUI ATCGAT 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 4 cut(s) 211, 340, 637, 825
Cac8I GCNNGC 2 cut(s) 178, 522
CfoI GCGC 3 cut(s) 113, 235, 244
Cfr13I GGNCC 2 cut(s) 115, 674
ClaI ATCGAT 1 cut(s) 290
Csp6I GTAC 3 cut(s) 91, 270, 454
CviAII CATG 1 cut(s) 35
CviQI GTAC 3 cut(s) 91, 270, 454
DdeI CTNAG 4 cut(s) 525, 698, 765, 843
DpnI GATC 5 cut(s) 156, 277, 377, 549, 603
DpnII GATC 5 cut(s) 154, 275, 375, 547, 601
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 4 cut(s) 475, 524, 584, 653
EarI CTCTTC 4 cut(s) 475, 524, 584, 653
Ecl136II GAGCTC 2 cut(s) 22, 136
Eco130I CCWWGG 1 cut(s) 34
Eco24I GRGCYC 2 cut(s) 24, 138
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 115, 674
Eco53kI GAGCTC 2 cut(s) 22, 136
Eco72I CACGTG 1 cut(s) 96
EcoICRI GAGCTC 2 cut(s) 22, 136
EcoRII CCWGG 2 cut(s) 52, 201
EcoT14I CCWWGG 1 cut(s) 34
EcoT38I GRGCYC 2 cut(s) 24, 138
ErhI CCWWGG 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 381, 429, 807
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 174, 309
FokI GGATG 4 cut(s) 218, 347, 644, 832
FriOI GRGCYC 2 cut(s) 24, 138
Fsp4HI GCNGC 2 cut(s) 174, 309
FspBI CTAG 1 cut(s) 705
GlaI GCGC 3 cut(s) 112, 234, 243
GluI GCNGC 2 cut(s) 174, 309
GsaI CCCAGC 1 cut(s) 739
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 3 cut(s) 39, 176, 763
HapII CCGG 3 cut(s) 151, 273, 686
HhaI GCGC 3 cut(s) 113, 235, 244
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 3 cut(s) 111, 233, 242
HinP1I GCGC 3 cut(s) 111, 233, 242
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 5 cut(s) 160, 287, 424, 742, 850
HpaII CCGG 3 cut(s) 151, 273, 686
HphI GGTGA 4 cut(s) 364, 379, 418, 620
Hpy166II GTNNAC 3 cut(s) 93, 270, 718
Hpy188I TCNGA 5 cut(s) 159, 286, 552, 631, 774
Hpy188III TCNNGA 4 cut(s) 72, 253, 299, 599
Hpy8I GTNNAC 3 cut(s) 93, 270, 718
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 4 cut(s) 94, 358, 703, 781
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 3 cut(s) 68, 89, 95
HpyCH4V TGCA 4 cut(s) 180, 311, 338, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 241
HpyF3I CTNAG 4 cut(s) 525, 698, 765, 843
HpySE526I ACGT 3 cut(s) 68, 89, 95
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 3 cut(s) 111, 233, 242
Kzo9I GATC 5 cut(s) 154, 275, 375, 547, 601
LguI GCTCTTC 1 cut(s) 653
LmnI GCTCC 6 cut(s) 505, 517, 534, 573, 688, 790
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 705
MaeII ACGT 3 cut(s) 68, 89, 95
MalI GATC 5 cut(s) 156, 277, 377, 549, 603
MboI GATC 5 cut(s) 154, 275, 375, 547, 601
MboII GAAGA 7 cut(s) 155, 433, 492, 541, 601, 670, 859
MflI RGATCY 3 cut(s) 154, 375, 547
MhlI GDGCHC 2 cut(s) 24, 138
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 8 cut(s) 247, 314, 409, 493, 499, 511, 625, 855
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 2 cut(s) 418, 751
Mox20I TGGCCA 1 cut(s) 39
MroXI GAANNNNTTC 2 cut(s) 104, 260
MscI TGGCCA 1 cut(s) 39
MseI TTAA 1 cut(s) 723
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 3 cut(s) 151, 273, 686
MspR9I CCNGG 3 cut(s) 54, 152, 203
Mva1269I GAATGC 2 cut(s) 152, 562
MvaI CCWGG 2 cut(s) 54, 203
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 239, 241
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 34
NdeII GATC 5 cut(s) 154, 275, 375, 547, 601
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 2 cut(s) 117, 507
NmeAIII GCCGAG 1 cut(s) 149
NspV TTCGAA 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 653
PctI GAATGC 2 cut(s) 152, 562
PdmI GAANNNNTTC 2 cut(s) 104, 260
PfeI GAWTC 3 cut(s) 160, 287, 850
PkrI GCNGC 2 cut(s) 175, 310
PleI GAGTC 2 cut(s) 418, 750
PmaCI CACGTG 1 cut(s) 96
PmlI CACGTG 1 cut(s) 96
PpsI GAGTC 2 cut(s) 418, 750
Ppu21I YACGTR 2 cut(s) 90, 96
Psp124BI GAGCTC 2 cut(s) 24, 138
Psp6I CCWGG 2 cut(s) 52, 201
PspCI CACGTG 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 735
PspGI CCWGG 2 cut(s) 52, 201
PspN4I GGNNCC 2 cut(s) 117, 507
PspPI GGNCC 2 cut(s) 115, 674
PsuI RGATCY 3 cut(s) 154, 375, 547
RsaI GTAC 3 cut(s) 92, 271, 455
RsaNI GTAC 3 cut(s) 91, 270, 454
SacI GAGCTC 2 cut(s) 24, 138
SapI GCTCTTC 1 cut(s) 653
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 2 cut(s) 174, 309
Sau3AI GATC 5 cut(s) 154, 275, 375, 547, 601
Sau96I GGNCC 2 cut(s) 115, 674
SchI GAGTC 2 cut(s) 418, 751
ScrFI CCNGG 3 cut(s) 54, 152, 203
SduI GDGCHC 2 cut(s) 24, 138
SfaNI GCATC 1 cut(s) 325
SfuI TTCGAA 1 cut(s) 656
SinI GGWCC 2 cut(s) 115, 674
SmlI CTYRAG 1 cut(s) 834
SmoI CTYRAG 1 cut(s) 834
Sse9I AATT 8 cut(s) 247, 314, 409, 493, 499, 511, 625, 855
SsiI CCGC 3 cut(s) 113, 173, 434
SspMI CTAG 1 cut(s) 705
SstI GAGCTC 2 cut(s) 24, 138
StyD4I CCNGG 3 cut(s) 52, 150, 201
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 3 cut(s) 71, 92, 98
TaqI TCGA 3 cut(s) 278, 290, 656
TasI AATT 8 cut(s) 247, 314, 409, 493, 499, 511, 625, 855
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 3 cut(s) 160, 287, 850
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 318, 800
VpaK11BI GGWCC 2 cut(s) 115, 674
XapI RAATTY 5 cut(s) 247, 409, 493, 499, 511
XmnI GAANNNNTTC 2 cut(s) 104, 260
XspI CTAG 1 cut(s) 705
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.