RchiOBHm_Chr2g0155761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000573
Physical Location & Seq
Reverse (-)
72624588 .. 72625434
847 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52463

Sequence Viewer

Length: 165 bp
ATGCCTGGGTCAATCGGATTGTGCAGGTATGGTGGTGGTCGACGGGAGTCCATGATCTATGGCGGTGGGCATCTTTGGCAGGGTATTTCCAAGACCAGTGGCGGCGTGGCTATGGCGGTTTTTGACAGATTGGTGTGGCGGCGGGGCGTTGGTGGTTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

5.67

Weight (kDa)

10.84

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 40
AciI CCGC 5 cut(s) 63, 102, 116, 139, 142
AjnI CCWGG 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 2 cut(s) 103, 140
BlsI GCNGC 2 cut(s) 104, 141
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 79
BoxI GACNNNNGTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 43
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 5 cut(s) 63, 102, 116, 139, 142
BspMI ACCTGC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 6
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 6
BstPAI GACNNNNGTC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 15
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 1 cut(s) 52
CviJI RGCY 1 cut(s) 110
CviKI_1 RGCY 1 cut(s) 110
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 4
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 30, 53, 60, 113
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 135
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 103, 140
Fsp4HI GCNGC 2 cut(s) 103, 140
GluI GCNGC 2 cut(s) 103, 140
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 10, 18, 65, 109
LweI GCATC 1 cut(s) 79
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 54
NlaIII CATG 1 cut(s) 55
PkrI GCNGC 2 cut(s) 104, 141
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
SalI GTCGAC 1 cut(s) 39
SatI GCNGC 2 cut(s) 103, 140
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 6
SetI ASST 1 cut(s) 29
SfaNI GCATC 1 cut(s) 79
SsiI CCGC 5 cut(s) 63, 102, 116, 139, 142
StyD4I CCNGG 1 cut(s) 4
TaqI TCGA 1 cut(s) 40
TauI GCSGC 2 cut(s) 105, 142
TscAI CASTG 1 cut(s) 103
TspRI CASTG 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.