Rorug05G0129300

E2F transcription factor-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
11494420 .. 11496792
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0129300.1

Sequence Viewer

Length: 444 bp
ATGGGCTTCGTCGAAACCATCTCCATGACCATCCTTCCTAATTCTCTGATTTGTTCGACTGAGTCGAGATCAGCGATGACCAAGCTCTCCACGATCTCTTCTCTCGTCTCCGATGTCCTCATCGTCCTCCTCTGCTCTCTCGTCATTCTCGGCCTTGTCTTCCGCCAAATGAACATCTCTAGTCCGGGTTCTCTTATTTCTAGTGGTAGAAAAGGCTCAGCTGATGGAAATTTCAATAATGAAAAGATGAACAAGGTGTATCAGCATAGAAGAATGACAATGGGACAGAGCAATTCTCAAGGTTGGGAGTATCAATGTGCTTACAAGATAACTAAAGGACATTTGGATAAGTATGGCCCTGAGAGAGTTCTCGATACCCCAATCACAGAGTGCTATGGGTATTTGTTACTATGTAGTGATCAAGGTTTTGTTGTGTGTGTGTAA

Protein Analysis

147

Amino Acids

16.22

Weight (kDa)

8.22

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 390
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 2 cut(s) 85, 221
AluI AGCT 2 cut(s) 85, 221
Alw26I GTCTC 1 cut(s) 112
AoxI GGCC 2 cut(s) 151, 355
ApoI RAATTY 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 151
BccI CCATC 3 cut(s) 26, 38, 218
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 2 cut(s) 180, 201
BlpI GCTNAGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 280, 312
Bpu1102I GCTNAGC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 30
BseMII CTCAG 3 cut(s) 51, 231, 351
BseRI GAGGAG 1 cut(s) 119
BshFI GGCC 2 cut(s) 153, 357
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 2 cut(s) 153, 357
Bsp143I GATC 3 cut(s) 68, 93, 418
Bsp1720I GCTNAGC 1 cut(s) 217
BspACI CCGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 153, 357
BspCNI CTCAG 3 cut(s) 52, 230, 352
BssMI GATC 3 cut(s) 68, 93, 418
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 60, 217, 360
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 3 cut(s) 71, 96, 421
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 3 cut(s) 68, 93, 418
BstSCI CCNGG 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 153, 357
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 356
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 6, 85, 153, 216, 221, 357
CviKI_1 RGCY 6 cut(s) 6, 85, 153, 216, 221, 357
DdeI CTNAG 3 cut(s) 60, 217, 360
DpnI GATC 3 cut(s) 70, 95, 420
DpnII GATC 3 cut(s) 68, 93, 418
DraIII CACNNNGTG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 267, 354, 396, 412
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 418
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 180, 201
HaeIII GGCC 2 cut(s) 153, 357
HapII CCGG 1 cut(s) 185
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 48, 112
Hpy188III TCNNGA 2 cut(s) 66, 371
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 60, 217, 360
Hsp92II CATG 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 3 cut(s) 68, 93, 418
LpnPI CCDG 2 cut(s) 198, 372
MaeI CTAG 2 cut(s) 180, 201
MaeIII GTNAC 1 cut(s) 405
MalI GATC 3 cut(s) 70, 95, 420
MboI GATC 3 cut(s) 68, 93, 418
MboII GAAGA 3 cut(s) 90, 151, 282
MluCI AATT 3 cut(s) 40, 229, 292
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 3 cut(s) 128, 137, 140
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 186
NciI CCSGG 1 cut(s) 186
NdeII GATC 3 cut(s) 68, 93, 418
NlaIII CATG 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 71
PflFI GACNNNGTC 1 cut(s) 61
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 356
PsyI GACNNNGTC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 23
Sau3AI GATC 3 cut(s) 68, 93, 418
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 186
SetI ASST 5 cut(s) 87, 223, 258, 304, 427
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 40, 229, 292
SsiI CCGC 1 cut(s) 163
SspMI CTAG 2 cut(s) 180, 201
StyD4I CCNGG 1 cut(s) 184
TaqI TCGA 4 cut(s) 12, 56, 65, 372
TasI AATT 3 cut(s) 40, 229, 292
TspDTI ATGAA 3 cut(s) 185, 255, 263
Tth111I GACNNNGTC 1 cut(s) 61
XapI RAATTY 1 cut(s) 229
XspI CTAG 2 cut(s) 180, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.