Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

31786537 .. 31788009

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCCTCCTCCGCCGCCGTCGATCGTCCTCCGGCCACCACCACCACCACCCGCCGCGACGCCTCCTACAGCCGAAAGCAGAAGTCCCTGAGCCTCCTCTGCTCCAATTTCCTCAGCCTCTACAACCGCGACGACGGCGCCACAGCCCTGATCGGCCTCGACGACGCCGCCTCTCGCCTCGGCGTCGTCCGCCGCCGGATCTACGACATCGTCAACGTGCTGGAGAGCGTCGGACTGCTGTCAAGAAAGTCCAAGAACACGTACACGTGGAAGGGTTTCGGCGCGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCGGCCTGCAACAACAACAACAACCCCCAGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCTCAGAATTTCGTGAAGCTGTTCGTGTGTACCGGATCGGAATCGGAATCGGAATCGGAATCGATTTCTCTTGATGAAGCCGCGAAATTACTGCTTGGAGTAGGGGATCCACAGAATGTATCGGTGATGAGGACAAAGGTGAGGAGGATCTATGACATTGCGAATGTGTTGTCGTCGGTGAATTTGATTGAGAAGACTCATACGGCGGATACAGGGAAGCCGGCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCCGAATTCGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCGGTGGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCCTTTCGCTCCGGTGGCGGTTCCAAGAGCTAGGAAGGGTGTTGACGTCAACAAGGTTTGCTGGGAGAGTCTGGGGGCTTATTATCGGCCTCAGTATCAGAACCAAGCGATGAAGGAGCTGTTTTCGCATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

350

Amino Acids

38.64

Weight (kDa)

9.21

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	26 - 92	8.6e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	129 - 216	1.3e-17	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	906
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	4 cut(s)	57, 129, 284, 491
AclWI	GGATC	7 cut(s)	206, 331, 333, 451, 509, 522, 563
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	5 cut(s)	415, 589, 673, 679, 691
AcuI	CTGAAG	1 cut(s)	320
AcvI	CACGTG	1 cut(s)	267
AcyI	GRCGYC	5 cut(s)	60, 138, 165, 183, 903
AfaI	GTAC	3 cut(s)	263, 439, 635
AflIII	ACRYGT	2 cut(s)	258, 264
AgsI	TTSAA	3 cut(s)	673, 679, 779
AjnI	CCWGG	2 cut(s)	321, 369
AjuI	GAANNNNNNNTTGG	1 cut(s)	1030
AluBI	AGCT	6 cut(s)	307, 427, 717, 846, 887, 976
AluI	AGCT	6 cut(s)	307, 427, 717, 846, 887, 976
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	371, 399
AlwI	GGATC	7 cut(s)	206, 331, 333, 451, 509, 522, 563
AoxI	GGCC	5 cut(s)	33, 154, 319, 345, 944
ApoI	RAATTY	5 cut(s)	415, 589, 673, 679, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	2 cut(s)	275, 428
AspLEI	GCGC	3 cut(s)	140, 284, 403
AspS9I	GGNCC	2 cut(s)	286, 857
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	4 cut(s)	544, 559, 598, 800
AsuII	TTCGAA	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	286, 857
BamHI	GGATCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BbrPI	CACGTG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	659, 806
BceAI	ACGGC	3 cut(s)	2, 151, 627
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	2 cut(s)	323, 371
BciVI	GTATCC	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	371, 399
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	2 cut(s)	141, 404
BfuI	GTATCC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	6 cut(s)	15, 55, 168, 193, 345, 489
BlsI	GCNGC	6 cut(s)	16, 56, 169, 194, 346, 490
Bme1390I	CCNGG	3 cut(s)	323, 341, 371
Bme18I	GGWCC	2 cut(s)	286, 857
BmgT120I	GGNCC	2 cut(s)	286, 857
BmiI	GGNNCC	5 cut(s)	139, 288, 516, 687, 879
BmrFI	CCNGG	3 cut(s)	323, 341, 371
BoxI	GACNNNNGTC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	89, 113
Bpu14I	TTCGAA	1 cut(s)	839
BpuEI	CTTGAG	1 cut(s)	1002
BpuMI	CCSGG	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	470
BsaAI	YACGTR	2 cut(s)	261, 267
BsaBI	GATNNNNATC	1 cut(s)	448
BsaHI	GRCGYC	5 cut(s)	60, 138, 165, 183, 903
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	178, 369
BsaWI	WCCGGW	2 cut(s)	440, 868
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	564
Bse8I	GATNNNNATC	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	323, 371
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	178, 369
BseGI	GGATG	3 cut(s)	379, 817, 1008
BseJI	GATNNNNATC	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	6 cut(s)	80, 127, 322, 425, 962, 1017
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	4 cut(s)	86, 565, 727, 766
BseYI	CCCAGC	1 cut(s)	918
Bsh1236I	CGCG	4 cut(s)	57, 129, 284, 491
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	5 cut(s)	35, 156, 321, 347, 946
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	6 cut(s)	32, 196, 341, 441, 629, 869
BslFI	GGGAC	3 cut(s)	70, 272, 736
BsmAI	GTCTC	2 cut(s)	371, 399
BsmFI	GGGAC	3 cut(s)	70, 272, 736
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	5 cut(s)	35, 156, 321, 347, 946
Bso31I	GGTCTC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	309
BspANI	GGCC	5 cut(s)	35, 156, 321, 347, 946
BspCNI	CTCAG	6 cut(s)	81, 126, 321, 424, 961, 1018
BspDI	ATCGAT	1 cut(s)	470
BspFNI	CGCG	4 cut(s)	57, 129, 284, 491
BspLI	GGNNCC	5 cut(s)	139, 288, 516, 687, 879
BspPI	GGATC	7 cut(s)	206, 331, 333, 451, 509, 522, 563
BspQI	GCTCTTC	1 cut(s)	836
BspT104I	TTCGAA	1 cut(s)	839
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	850
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	178, 369
BssNI	GRCGYC	5 cut(s)	60, 138, 165, 183, 903
Bst2UI	CCWGG	2 cut(s)	323, 371
Bst6I	CTCTTC	4 cut(s)	655, 704, 764, 836
BstACI	GRCGYC	5 cut(s)	60, 138, 165, 183, 903
BstBAI	YACGTR	2 cut(s)	261, 267
BstBI	TTCGAA	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	349, 630, 702
BstDEI	CTNAG	7 cut(s)	89, 113, 308, 411, 705, 948, 1026
BstF5I	GGATG	3 cut(s)	379, 817, 1008
BstFNI	CGCG	4 cut(s)	57, 129, 284, 491
BstH2I	RGCGCY	2 cut(s)	141, 404
BstHHI	GCGC	3 cut(s)	140, 284, 403
BstMAI	GTCTC	2 cut(s)	371, 399
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 135, 189, 407, 872, 982
BstNI	CCWGG	2 cut(s)	323, 371
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	321, 339, 369
BstSFI	CTRYAG	1 cut(s)	67
BstUI	CGCG	4 cut(s)	57, 129, 284, 491
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	5 cut(s)	198, 325, 514, 555, 727
BstYI	RGATCY	5 cut(s)	198, 325, 514, 555, 727
Bsu15I	ATCGAT	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	5 cut(s)	35, 156, 321, 347, 946
BsuTUI	ATCGAT	1 cut(s)	470
BtgZI	GCGATG	1 cut(s)	980
BtsCI	GGATG	3 cut(s)	379, 817, 1008
Cac8I	GCNNGC	3 cut(s)	349, 630, 702
CfoI	GCGC	3 cut(s)	140, 284, 403
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	286, 857
ClaI	ATCGAT	1 cut(s)	470
CseI	GACGC	4 cut(s)	68, 172, 173, 217
Csp6I	GTAC	3 cut(s)	262, 438, 634
CviQI	GTAC	3 cut(s)	262, 438, 634
DdeI	CTNAG	7 cut(s)	89, 113, 308, 411, 705, 948, 1026
DinI	GGCGCC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	4 cut(s)	655, 704, 764, 836
EarI	CTCTTC	4 cut(s)	655, 704, 764, 836
EciI	GGCGGA	2 cut(s)	179, 629
Ecl136II	GAGCTC	1 cut(s)	307
Eco147I	AGGCCT	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	286, 857
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	320
Eco72I	CACGTG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	307
EcoRI	GAATTC	2 cut(s)	679, 691
EcoRII	CCWGG	2 cut(s)	321, 369
EcoT38I	GRGCYC	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaiI	YATR	3 cut(s)	561, 609, 990
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	3 cut(s)	70, 272, 736
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	6 cut(s)	15, 55, 168, 193, 345, 489
FokI	GGATG	3 cut(s)	386, 824, 1015
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	15, 55, 168, 193, 345, 489
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	3 cut(s)	139, 283, 402
GluI	GCNGC	6 cut(s)	15, 55, 168, 193, 345, 489
GsaI	CCCAGC	1 cut(s)	922
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	2 cut(s)	141, 404
HaeIII	GGCC	5 cut(s)	35, 156, 321, 347, 946
HapII	CCGG	6 cut(s)	32, 196, 341, 441, 629, 869
HgaI	GACGC	4 cut(s)	68, 172, 173, 217
HhaI	GCGC	3 cut(s)	140, 284, 403
Hin1I	GRCGYC	5 cut(s)	60, 138, 165, 183, 903
Hin6I	GCGC	3 cut(s)	138, 282, 401
HinP1I	GCGC	3 cut(s)	138, 282, 401
HincII	GTYRAC	3 cut(s)	214, 901, 907
HindII	GTYRAC	3 cut(s)	214, 901, 907
HinfI	GANTC	8 cut(s)	331, 449, 455, 461, 467, 604, 925, 1033
HpaII	CCGG	6 cut(s)	32, 196, 341, 441, 629, 869
HphI	GGTGA	4 cut(s)	544, 559, 598, 800
Hpy166II	GTNNAC	5 cut(s)	214, 264, 438, 901, 907
Hpy188III	TCNNGA	5 cut(s)	243, 421, 479, 779, 1050
Hpy8I	GTNNAC	5 cut(s)	214, 264, 438, 901, 907
Hpy99I	CGWCG	9 cut(s)	23, 62, 134, 137, 164, 167, 188, 233, 586
HpyAV	CCTTC	6 cut(s)	265, 295, 311, 823, 886, 964
HpyCH4IV	ACGT	4 cut(s)	216, 260, 266, 903
HpyCH4V	TGCA	2 cut(s)	351, 804
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 135, 189, 407, 872, 982
HpyF3I	CTNAG	7 cut(s)	89, 113, 308, 411, 705, 948, 1026
HpySE526I	ACGT	4 cut(s)	216, 260, 266, 903
Hsp92I	GRCGYC	5 cut(s)	60, 138, 165, 183, 903
HspAI	GCGC	3 cut(s)	138, 282, 401
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
LguI	GCTCTTC	1 cut(s)	836
LmnI	GCTCC	8 cut(s)	107, 304, 685, 697, 714, 753, 871, 973
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	4 cut(s)	216, 260, 266, 903
MboII	GAAGA	7 cut(s)	326, 613, 672, 721, 781, 853, 1042
MflI	RGATCY	5 cut(s)	198, 325, 514, 555, 727
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	9 cut(s)	106, 415, 494, 589, 673, 679, 691, 805, 1038
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	3 cut(s)	325, 598, 934
MmeI	TCCRAC	1 cut(s)	211
MroNI	GCCGGC	1 cut(s)	628
MroXI	GAANNNNTTC	2 cut(s)	275, 428
MspI	CCGG	6 cut(s)	32, 196, 341, 441, 629, 869
MspR9I	CCNGG	3 cut(s)	323, 341, 371
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	2 cut(s)	323, 371
MvnI	CGCG	4 cut(s)	57, 129, 284, 491
MwoI	GCNNNNNNNGC	6 cut(s)	99, 135, 189, 407, 872, 982
NaeI	GCCGGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	341
NgoMIV	GCCGGC	1 cut(s)	628
NlaIV	GGNNCC	5 cut(s)	139, 288, 516, 687, 879
NmeAIII	GCCGAG	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	839
PceI	AGGCCT	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	742
PdiI	GCCGGC	1 cut(s)	630
PdmI	GAANNNNTTC	2 cut(s)	275, 428
PfeI	GAWTC	5 cut(s)	449, 455, 461, 467, 1033
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	16, 56, 169, 194, 346, 490
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	3 cut(s)	325, 598, 933
PluTI	GGCGCC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	267
PmlI	CACGTG	1 cut(s)	267
PpsI	GAGTC	3 cut(s)	325, 598, 933
Ppu21I	YACGTR	2 cut(s)	261, 267
PshAI	GACNNNNGTC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	321, 369
PspCI	CACGTG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	918
PspGI	CCWGG	2 cut(s)	321, 369
PspN4I	GGNNCC	5 cut(s)	139, 288, 516, 687, 879
PspPI	GGNCC	2 cut(s)	286, 857
PsuI	RGATCY	5 cut(s)	198, 325, 514, 555, 727
PsyI	GACNNNGTC	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	3 cut(s)	263, 439, 635
RsaNI	GTAC	3 cut(s)	262, 438, 634
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	836
SatI	GCNGC	6 cut(s)	15, 55, 168, 193, 345, 489
Sau96I	GGNCC	2 cut(s)	286, 857
SchI	GAGTC	3 cut(s)	325, 598, 934
ScrFI	CCNGG	3 cut(s)	323, 341, 371
SduI	GDGCHC	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	67
SfoI	GGCGCC	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	839
SinI	GGWCC	2 cut(s)	286, 857
SmlI	CTYRAG	1 cut(s)	1017
SmoI	CTYRAG	1 cut(s)	1017
Sse9I	AATT	9 cut(s)	106, 415, 494, 589, 673, 679, 691, 805, 1038
SseBI	AGGCCT	1 cut(s)	321
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	888
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	321, 339, 369
TaiI	ACGT	4 cut(s)	219, 263, 269, 906
TaqI	TCGA	4 cut(s)	21, 159, 470, 839
TasI	AATT	9 cut(s)	106, 415, 494, 589, 673, 679, 691, 805, 1038
TauI	GCSGC	6 cut(s)	17, 57, 170, 195, 347, 491
TfiI	GAWTC	5 cut(s)	449, 455, 461, 467, 1033
TspDTI	ATGAA	2 cut(s)	498, 983
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	286, 857
XapI	RAATTY	5 cut(s)	415, 589, 673, 679, 691
XmnI	GAANNNNTTC	2 cut(s)	275, 428
XspI	CTAG	1 cut(s)	888
ZraI	GACGTC	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.