Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

44071032 .. 44071553

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG334700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGGACGAAGGTGAGGAGGATCTATGACACTGCGAATGTGTTGTCGTCGTTGAATTTGATTGAGAAGACTCATAAGGCGGATTCAGGGAAGCCGGCGTACAGGTGGTTGGAGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCAGAGCCGAATTTGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATTCGAGTATTAAGAGGAGCAAGGTTATGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAAATGCAATTCAGATGGCTGTGGGGCGAATTCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCTTTTAACTCCGGTGGCGGTTCCAAGAGCTCGGAAGGGTGTTGACATCAACAAGGTTTGCTGGGAGAGTCTTGGGGCTTATTATCGGCCTCAATATCAGAACCAAGCATTGAAGGAGCTGTTTTCACATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

173

Amino Acids

19.76

Weight (kDa)

9.6

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	2 - 37	9.1e-09	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 344
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	6 cut(s)	55, 139, 145, 157, 202, 292
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	55, 139, 145, 245, 439
AjuI	GAANNNNNNNTTGG	1 cut(s)	499
AluBI	AGCT	5 cut(s)	115, 183, 315, 356, 445
AluI	AGCT	5 cut(s)	115, 183, 315, 356, 445
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	413
ApoI	RAATTY	6 cut(s)	55, 139, 145, 157, 202, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AsuHPI	GGTGA	2 cut(s)	25, 266
AsuII	TTCGAA	2 cut(s)	296, 308
BanII	GRGCYC	1 cut(s)	358
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	358
BccI	CCATC	2 cut(s)	125, 272
BglII	AGATCT	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	74
Bpu14I	TTCGAA	2 cut(s)	296, 308
BpuEI	CTTGAG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	3 cut(s)	31, 193, 232
BseYI	CCCAGC	1 cut(s)	387
BshFI	GGCC	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	95, 338
BslFI	GGGAC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	415
Bsp119I	TTCGAA	2 cut(s)	296, 308
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	21, 193, 247
BspACI	CCGC	2 cut(s)	80, 344
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	2 cut(s)	296, 308
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	3 cut(s)	21, 193, 247
Bst6I	CTCTTC	4 cut(s)	121, 170, 230, 305
BstBI	TTCGAA	2 cut(s)	296, 308
BstC8I	GCNNGC	2 cut(s)	96, 168
BstDEI	CTNAG	2 cut(s)	171, 495
BstF5I	GGATG	1 cut(s)	477
BstKTI	GATC	3 cut(s)	24, 196, 250
BstMBI	GATC	3 cut(s)	21, 193, 247
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	21, 193
BstYI	RGATCY	2 cut(s)	21, 193
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	477
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	96, 168
Cfr10I	RCCGGY	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	100
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	171, 495
DpnI	GATC	3 cut(s)	23, 195, 249
DpnII	GATC	3 cut(s)	21, 193, 247
Eam1104I	CTCTTC	4 cut(s)	121, 170, 230, 305
EarI	CTCTTC	4 cut(s)	121, 170, 230, 305
EciI	GGCGGA	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoRI	GAATTC	3 cut(s)	145, 202, 292
EcoT38I	GRGCYC	1 cut(s)	358
FaiI	YATR	4 cut(s)	27, 75, 230, 459
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	202
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	358
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	2 cut(s)	95, 338
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	4 cut(s)	70, 83, 394, 502
HpaII	CCGG	2 cut(s)	95, 338
HphI	GGTGA	2 cut(s)	25, 266
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	6 cut(s)	151, 198, 277, 360, 426, 513
Hpy188III	TCNNGA	2 cut(s)	245, 519
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	4 cut(s)	4, 292, 355, 433
HpyCH4V	TGCA	1 cut(s)	270
HpyF3I	CTNAG	2 cut(s)	171, 495
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	21, 193, 247
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	5 cut(s)	112, 163, 180, 219, 442
LpnPI	CCDG	8 cut(s)	72, 88, 108, 152, 236, 332, 351, 373
MalI	GATC	3 cut(s)	23, 195, 249
MboI	GATC	3 cut(s)	21, 193, 247
MboII	GAAGA	6 cut(s)	79, 138, 187, 247, 322, 511
MflI	RGATCY	2 cut(s)	21, 193
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	8 cut(s)	55, 139, 145, 157, 202, 271, 292, 507
MlyI	GAGTC	2 cut(s)	64, 403
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	6 cut(s)	9, 12, 171, 210, 250, 426
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	2 cut(s)	213, 332
MspI	CCGG	2 cut(s)	95, 338
NaeI	GCCGGC	1 cut(s)	96
NdeII	GATC	3 cut(s)	21, 193, 247
NgoMIV	GCCGGC	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	348
NspV	TTCGAA	2 cut(s)	296, 308
PciSI	GCTCTTC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	83, 502
PleI	GAGTC	2 cut(s)	64, 402
PpsI	GAGTC	2 cut(s)	64, 402
Psp124BI	GAGCTC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	348
PsuI	RGATCY	2 cut(s)	21, 193
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	213, 332
Sau3AI	GATC	3 cut(s)	21, 193, 247
SchI	GAGTC	2 cut(s)	64, 403
SduI	GDGCHC	1 cut(s)	358
SfuI	TTCGAA	2 cut(s)	296, 308
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	8 cut(s)	55, 139, 145, 157, 202, 271, 292, 507
SsiI	CCGC	2 cut(s)	80, 344
SstI	GAGCTC	1 cut(s)	358
TaqI	TCGA	3 cut(s)	206, 296, 308
TasI	AATT	8 cut(s)	55, 139, 145, 157, 202, 271, 292, 507
TfiI	GAWTC	2 cut(s)	83, 502
Tru1I	TTAA	2 cut(s)	213, 332
Tru9I	TTAA	2 cut(s)	213, 332
TscAI	CASTG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	6 cut(s)	55, 139, 145, 157, 202, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.