Rroxscaffold_6G00392580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000573
Physical Location & Seq
Forward (+)
12183130 .. 12183453
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392580.1

Sequence Viewer

Length: 324 bp
ATGAATGCAAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGGGAGTTCAAGATCAAGGTGAGGTTGGGAACTGCAATTCGAATGGGCGTGGGGCGAAGGAGAGTTCGAAGAGTGGCCAGTTTGGTCATTTCGCTCCGGTGGCGTTCCAAGAACTAGGAAAGGTGTTGACATCAACAAGGTTGCTGGGAGAGTCTTGGACTCTTGGGGCTTATTATTGGCCTCGGTATCGGAAGCGCCAAGGAAAAAGAAGAGTTCGGAAACATCATGCCACGGCCATTCGTGCTGGTCCCGAAGTTGACCGATTGGCTTCAATGGATGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.85

Weight (kDa)

10.47

Isoelectric Point (pI)

26.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 112, 270
AgsI TTSAA 2 cut(s) 47, 309
AoxI GGCC 3 cut(s) 112, 215, 270
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 68
AsuII TTCGAA 2 cut(s) 77, 104
AvaII GGWCC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 114
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 285
BfaI CTAG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 286
Bpu14I TTCGAA 2 cut(s) 77, 104
BsaJI CCNNGG 3 cut(s) 218, 235, 267
BsaWI WCCGGW 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 218, 235, 267
BseGI GGATG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 3 cut(s) 114, 217, 272
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 3 cut(s) 114, 217, 272
Bsp119I TTCGAA 2 cut(s) 77, 104
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 3 cut(s) 114, 217, 272
BspLI GGNNCC 1 cut(s) 286
BspT104I TTCGAA 2 cut(s) 77, 104
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 3 cut(s) 218, 235, 267
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 101, 241
BstBI TTCGAA 2 cut(s) 77, 104
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 137, 278
BsuRI GGCC 3 cut(s) 114, 217, 272
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 319
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 284
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 114, 206, 217, 272, 305
CviKI_1 RGCY 5 cut(s) 114, 206, 217, 272, 305
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 2 cut(s) 112, 270
Eam1104I CTCTTC 2 cut(s) 101, 241
EarI CTCTTC 2 cut(s) 101, 241
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 266
FaiI YATR 1 cut(s) 264
FaqI GGGAC 1 cut(s) 270
FatI CATG 1 cut(s) 262
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 3 cut(s) 114, 217, 272
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 2 cut(s) 165, 295
HindII GTYRAC 2 cut(s) 165, 295
HinfI GANTC 2 cut(s) 188, 196
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 165, 295
Hpy188I TCNGA 2 cut(s) 228, 255
Hpy188III TCNNGA 2 cut(s) 47, 287
Hpy8I GTNNAC 2 cut(s) 165, 295
HpyAV CCTTC 2 cut(s) 31, 88
HpyCH4V TGCA 2 cut(s) 8, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 278
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 21, 136
LpnPI CCDG 4 cut(s) 128, 147, 167, 267
MaeI CTAG 1 cut(s) 152
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 118, 258
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 73
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 2 cut(s) 190, 197
MnlI CCTC 3 cut(s) 12, 52, 228
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 137, 278
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 286
NspV TTCGAA 2 cut(s) 77, 104
PctI GAATGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 190, 196
PpsI GAGTC 2 cut(s) 190, 196
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 284
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 2 cut(s) 190, 197
SetI ASST 5 cut(s) 30, 58, 63, 162, 179
SfuI TTCGAA 2 cut(s) 77, 104
SinI GGWCC 1 cut(s) 284
Sse9I AATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 235
TaqI TCGA 2 cut(s) 77, 104
TaqII GACCGA 1 cut(s) 312
TasI AATT 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 284
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.