Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

31855795 .. 31857296

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG255900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCCTCCTCCTCCGCCGCCGCCGCCGCCGTCGATCGTCCTCCGGCCACCACCACCACCACCCGCCGCGACGCCTCCTACAGCCGAAAGCAGAAGTCCCTGAGCCTCCTCTGCTCCAATTTCCTCAGCCTCTACAACCGCGACGACGGCGCCACCGCCCTGATCGGCCTCGACGACGCGGCCTCGCGCCTCGGCGTCGTCCGCCGCCGGATCTACGACATCGTCAACGTGCTGGAGAGCGTCGGACTGCTGTCAAGAAAGTCCAAGAACACGTACACGTGGAAGGGTTTCGGCGCGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCGGCCTGCAACAACAACAACAACCACCCCCAGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCTCAGAATTTCGTGAAGCTGTTCGTGTGTACCGGATCGGAATCGGAATCGATTTCTCTTGATGAAGCAGCGAAATTACTGCTTGGAGTAGGGGATGCTCACAATGTATCAGTGATGAGGACAAAGGTGAGGAGGATCTATGACATTGCGAATGTGTTATCGTCGGTGAATTTGATTGAGAAGACTCATACGGCGGATACAGGGAAGCCGGCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCCGAATGCGGAGCCGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCGGTGGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCCTTTCGCTCCGGTGGCTGTTCCAAGAGCTAGGAAGGGTGTTGACGTCAACAAGGTTTGCTGGGAGAGTCTGGGGGATTATTATCGGCCTCAGTATCAGAACCAAGCGATGAAGGAGCTGTTTTCGCATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

351

Amino Acids

38.62

Weight (kDa)

9.29

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	30 - 96	8.6e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	134 - 217	2.4e-18	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	909
AccB1I	GGYRCC	1 cut(s)	149
AccII	CGCG	5 cut(s)	69, 141, 179, 187, 296
AclWI	GGATC	5 cut(s)	218, 343, 345, 466, 566
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	4 cut(s)	430, 592, 676, 682
AcuI	CTGAAG	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	279
AcyI	GRCGYC	4 cut(s)	72, 150, 195, 906
AfaI	GTAC	3 cut(s)	275, 454, 638
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	2 cut(s)	270, 276
AgsI	TTSAA	3 cut(s)	676, 682, 782
AjnI	CCWGG	2 cut(s)	333, 384
AjuI	GAANNNNNNNTTGG	1 cut(s)	1033
AluBI	AGCT	6 cut(s)	319, 442, 720, 849, 890, 979
AluI	AGCT	6 cut(s)	319, 442, 720, 849, 890, 979
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	386, 414
AlwI	GGATC	5 cut(s)	218, 343, 345, 466, 566
AoxI	GGCC	6 cut(s)	45, 166, 180, 331, 357, 947
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	4 cut(s)	430, 592, 676, 682
Asp700I	GAANNNNTTC	2 cut(s)	287, 443
AspLEI	GCGC	4 cut(s)	152, 189, 296, 418
AspS9I	GGNCC	2 cut(s)	298, 860
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	562, 601, 803
AsuII	TTCGAA	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	298, 860
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbrPI	CACGTG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	662, 809
BceAI	ACGGC	3 cut(s)	14, 163, 630
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	2 cut(s)	335, 386
BciVI	GTATCC	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	386, 414
BfaI	CTAG	1 cut(s)	891
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	2 cut(s)	153, 419
BfuI	GTATCC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	9 cut(s)	18, 21, 24, 27, 67, 180, 205, 357, 492
BlsI	GCNGC	9 cut(s)	19, 22, 25, 28, 68, 181, 206, 358, 493
Bme1390I	CCNGG	3 cut(s)	335, 353, 386
Bme18I	GGWCC	2 cut(s)	298, 860
BmgT120I	GGNCC	2 cut(s)	298, 860
BmiI	GGNNCC	4 cut(s)	151, 300, 690, 702
BmrFI	CCNGG	3 cut(s)	335, 353, 386
BmsI	GCATC	1 cut(s)	508
BoxI	GACNNNNGTC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	611
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	101, 125
Bpu14I	TTCGAA	1 cut(s)	842
BpuEI	CTTGAG	1 cut(s)	1005
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	473
BsaAI	YACGTR	2 cut(s)	273, 279
BsaBI	GATNNNNATC	2 cut(s)	463, 942
BsaHI	GRCGYC	4 cut(s)	72, 150, 195, 906
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	190, 384
BsaWI	WCCGGW	2 cut(s)	455, 871
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	2 cut(s)	631, 703
Bse1I	ACTGG	1 cut(s)	853
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	2 cut(s)	463, 942
BseBI	CCWGG	2 cut(s)	335, 386
BseCI	ATCGAT	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	190, 384
BseGI	GGATG	4 cut(s)	394, 523, 820, 1011
BseJI	GATNNNNATC	2 cut(s)	463, 942
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	6 cut(s)	92, 139, 334, 440, 965, 1020
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	4 cut(s)	98, 568, 730, 769
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	921
Bsh1236I	CGCG	5 cut(s)	69, 141, 179, 187, 296
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	6 cut(s)	47, 168, 182, 333, 359, 949
BshNI	GGYRCC	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	7 cut(s)	44, 208, 353, 456, 632, 704, 872
BslFI	GGGAC	3 cut(s)	82, 284, 739
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	386, 414
BsmFI	GGGAC	3 cut(s)	82, 284, 739
BsmI	GAATGC	2 cut(s)	700, 745
BsnI	GGCC	6 cut(s)	47, 168, 182, 333, 359, 949
Bso31I	GGTCTC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
BspANI	GGCC	6 cut(s)	47, 168, 182, 333, 359, 949
BspCNI	CTCAG	6 cut(s)	93, 138, 333, 439, 964, 1021
BspDI	ATCGAT	1 cut(s)	473
BspFNI	CGCG	5 cut(s)	69, 141, 179, 187, 296
BspLI	GGNNCC	4 cut(s)	151, 300, 690, 702
BspPI	GGATC	5 cut(s)	218, 343, 345, 466, 566
BspQI	GCTCTTC	1 cut(s)	839
BspT104I	TTCGAA	1 cut(s)	842
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	2 cut(s)	631, 703
BsrI	ACTGG	1 cut(s)	853
BssAI	RCCGGY	2 cut(s)	631, 703
BssECI	CCNNGG	2 cut(s)	190, 384
BssMI	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
BssNI	GRCGYC	4 cut(s)	72, 150, 195, 906
Bst2UI	CCWGG	2 cut(s)	335, 386
Bst6I	CTCTTC	4 cut(s)	658, 707, 767, 839
BstACI	GRCGYC	4 cut(s)	72, 150, 195, 906
BstBAI	YACGTR	2 cut(s)	273, 279
BstBI	TTCGAA	1 cut(s)	842
BstC8I	GCNNGC	3 cut(s)	361, 633, 705
BstDEI	CTNAG	7 cut(s)	101, 125, 320, 426, 708, 951, 1029
BstF5I	GGATG	4 cut(s)	394, 523, 820, 1011
BstFNI	CGCG	5 cut(s)	69, 141, 179, 187, 296
BstH2I	RGCGCY	2 cut(s)	153, 419
BstHHI	GCGC	4 cut(s)	152, 189, 296, 418
BstKTI	GATC	9 cut(s)	37, 165, 213, 340, 351, 461, 561, 733, 787
BstMAI	GTCTC	2 cut(s)	386, 414
BstMBI	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 26, 111, 147, 201, 422, 704, 875, 985
BstNI	CCWGG	2 cut(s)	335, 386
BstPAI	GACNNNNGTC	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	333, 351, 384
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	5 cut(s)	69, 141, 179, 187, 296
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	4 cut(s)	210, 337, 558, 730
BstYI	RGATCY	4 cut(s)	210, 337, 558, 730
Bsu15I	ATCGAT	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	6 cut(s)	47, 168, 182, 333, 359, 949
BsuTUI	ATCGAT	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	983
BtsCI	GGATG	4 cut(s)	394, 523, 820, 1011
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	361, 633, 705
CfoI	GCGC	4 cut(s)	152, 189, 296, 418
Cfr10I	RCCGGY	2 cut(s)	631, 703
Cfr13I	GGNCC	2 cut(s)	298, 860
ClaI	ATCGAT	1 cut(s)	473
CseI	GACGC	4 cut(s)	80, 184, 185, 229
Csp6I	GTAC	3 cut(s)	274, 453, 637
CviQI	GTAC	3 cut(s)	274, 453, 637
DdeI	CTNAG	7 cut(s)	101, 125, 320, 426, 708, 951, 1029
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	9 cut(s)	36, 164, 212, 339, 350, 460, 560, 732, 786
DpnII	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	4 cut(s)	658, 707, 767, 839
EarI	CTCTTC	4 cut(s)	658, 707, 767, 839
EciI	GGCGGA	3 cut(s)	4, 191, 632
Ecl136II	GAGCTC	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	298, 860
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	333, 384
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
FaiI	YATR	3 cut(s)	564, 612, 993
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	3 cut(s)	82, 284, 739
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	9 cut(s)	18, 21, 24, 27, 67, 180, 205, 357, 492
FokI	GGATG	4 cut(s)	401, 530, 827, 1018
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	9 cut(s)	18, 21, 24, 27, 67, 180, 205, 357, 492
FspBI	CTAG	1 cut(s)	891
GlaI	GCGC	4 cut(s)	151, 188, 295, 417
GluI	GCNGC	9 cut(s)	18, 21, 24, 27, 67, 180, 205, 357, 492
GsaI	CCCAGC	1 cut(s)	925
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	2 cut(s)	153, 419
HaeIII	GGCC	6 cut(s)	47, 168, 182, 333, 359, 949
HapII	CCGG	7 cut(s)	44, 208, 353, 456, 632, 704, 872
HgaI	GACGC	4 cut(s)	80, 184, 185, 229
HhaI	GCGC	4 cut(s)	152, 189, 296, 418
Hin1I	GRCGYC	4 cut(s)	72, 150, 195, 906
Hin6I	GCGC	4 cut(s)	150, 187, 294, 416
HinP1I	GCGC	4 cut(s)	150, 187, 294, 416
HincII	GTYRAC	3 cut(s)	226, 904, 910
HindII	GTYRAC	3 cut(s)	226, 904, 910
HinfI	GANTC	6 cut(s)	343, 464, 470, 607, 928, 1036
HpaII	CCGG	7 cut(s)	44, 208, 353, 456, 632, 704, 872
HphI	GGTGA	3 cut(s)	562, 601, 803
Hpy166II	GTNNAC	5 cut(s)	226, 276, 453, 904, 910
Hpy188III	TCNNGA	5 cut(s)	255, 436, 482, 782, 1053
Hpy8I	GTNNAC	5 cut(s)	226, 276, 453, 904, 910
Hpy99I	CGWCG	9 cut(s)	35, 74, 146, 149, 176, 179, 200, 245, 589
HpyAV	CCTTC	6 cut(s)	277, 307, 323, 826, 889, 967
HpyCH4IV	ACGT	4 cut(s)	228, 272, 278, 906
HpyCH4V	TGCA	2 cut(s)	363, 807
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 26, 111, 147, 201, 422, 704, 875, 985
HpyF3I	CTNAG	7 cut(s)	101, 125, 320, 426, 708, 951, 1029
HpySE526I	ACGT	4 cut(s)	228, 272, 278, 906
Hsp92I	GRCGYC	4 cut(s)	72, 150, 195, 906
HspAI	GCGC	4 cut(s)	150, 187, 294, 416
KasI	GGCGCC	1 cut(s)	149
KroI	GCCGGC	2 cut(s)	631, 703
KroNI	GCCGGC	2 cut(s)	633, 705
Kzo9I	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
LguI	GCTCTTC	1 cut(s)	839
LmnI	GCTCC	8 cut(s)	119, 316, 688, 700, 717, 756, 874, 976
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	891
MaeII	ACGT	4 cut(s)	228, 272, 278, 906
MalI	GATC	9 cut(s)	36, 164, 212, 339, 350, 460, 560, 732, 786
MboI	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
MboII	GAAGA	7 cut(s)	338, 616, 675, 724, 784, 856, 1045
MflI	RGATCY	4 cut(s)	210, 337, 558, 730
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	8 cut(s)	118, 430, 497, 592, 676, 682, 808, 1041
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	337, 601, 937
MmeI	TCCRAC	1 cut(s)	223
MroNI	GCCGGC	2 cut(s)	631, 703
MroXI	GAANNNNTTC	2 cut(s)	287, 443
MspI	CCGG	7 cut(s)	44, 208, 353, 456, 632, 704, 872
MspR9I	CCNGG	3 cut(s)	335, 353, 386
Mva1269I	GAATGC	2 cut(s)	700, 745
MvaI	CCWGG	2 cut(s)	335, 386
MvnI	CGCG	5 cut(s)	69, 141, 179, 187, 296
MwoI	GCNNNNNNNGC	9 cut(s)	23, 26, 111, 147, 201, 422, 704, 875, 985
NaeI	GCCGGC	2 cut(s)	633, 705
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
NgoMIV	GCCGGC	2 cut(s)	631, 703
NlaIV	GGNNCC	4 cut(s)	151, 300, 690, 702
NmeAIII	GCCGAG	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	842
PceI	AGGCCT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	839
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	2 cut(s)	700, 745
PdiI	GCCGGC	2 cut(s)	633, 705
PdmI	GAANNNNTTC	2 cut(s)	287, 443
PfeI	GAWTC	3 cut(s)	464, 470, 1036
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	9 cut(s)	19, 22, 25, 28, 68, 181, 206, 358, 493
Ple19I	CGATCG	1 cut(s)	37
PleI	GAGTC	3 cut(s)	337, 601, 936
PluTI	GGCGCC	1 cut(s)	153
PmaCI	CACGTG	1 cut(s)	279
PmlI	CACGTG	1 cut(s)	279
PpsI	GAGTC	3 cut(s)	337, 601, 936
Ppu21I	YACGTR	2 cut(s)	273, 279
PshAI	GACNNNNGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	333, 384
PspCI	CACGTG	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	921
PspGI	CCWGG	2 cut(s)	333, 384
PspN4I	GGNNCC	4 cut(s)	151, 300, 690, 702
PspPI	GGNCC	2 cut(s)	298, 860
PsuI	RGATCY	4 cut(s)	210, 337, 558, 730
PsyI	GACNNNGTC	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	37
RsaI	GTAC	3 cut(s)	275, 454, 638
RsaNI	GTAC	3 cut(s)	274, 453, 637
SacI	GAGCTC	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	839
SatI	GCNGC	9 cut(s)	18, 21, 24, 27, 67, 180, 205, 357, 492
Sau3AI	GATC	9 cut(s)	34, 162, 210, 337, 348, 458, 558, 730, 784
Sau96I	GGNCC	2 cut(s)	298, 860
SchI	GAGTC	3 cut(s)	337, 601, 937
ScrFI	CCNGG	3 cut(s)	335, 353, 386
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	79
SfoI	GGCGCC	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	842
SinI	GGWCC	2 cut(s)	298, 860
SmlI	CTYRAG	1 cut(s)	1020
SmoI	CTYRAG	1 cut(s)	1020
Sse9I	AATT	8 cut(s)	118, 430, 497, 592, 676, 682, 808, 1041
SseBI	AGGCCT	1 cut(s)	333
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	891
SstI	GAGCTC	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	333, 351, 384
TaiI	ACGT	4 cut(s)	231, 275, 281, 909
TaqI	TCGA	4 cut(s)	33, 171, 473, 842
TasI	AATT	8 cut(s)	118, 430, 497, 592, 676, 682, 808, 1041
TauI	GCSGC	8 cut(s)	20, 23, 26, 29, 69, 182, 207, 359
TfiI	GAWTC	3 cut(s)	464, 470, 1036
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	501, 986
TspRI	CASTG	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	298, 860
XapI	RAATTY	4 cut(s)	430, 592, 676, 682
XmnI	GAANNNNTTC	2 cut(s)	287, 443
XspI	CTAG	1 cut(s)	891
ZraI	GACGTC	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.