Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

1885861 .. 1891704

Gene Structure 5844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGCGCGCCCGCCGGGTCGGCCCGGGTCCGAGAACCTTCGCCATCATCGCCGAGAGGTACGTCGCCGCCGGCAAACCCGATAGAGCTGTCAAAGTTTTTCTCTCTATGCATGAACATGGGTGCCCTCAGGATTTGAATTCTTTCAATACTGTTCTTGATGTGCTCTGTAAAGCTAAGCGAGTTGAAAAGGCTTACAATTTGTTTAAGGTGTTTCGGGGAAGATTTAGAGCTGATTGTGTTAGTTACAATGTGATTGTTAATGGGTGGTGTTTGTTTAAGAGGACTCCTAAGGCTTTAGAAGTTTTGAGGGAGATGGTTGAGAGAGGAATCGAGCCGAGTTTGGTTACTTATAATGTGATGCTTAAAGGGTATCTTAGAGCTGGGCAGGTTAAGGAGGCGTGGGAGTTTTTTTTGGAAATGAAGAAGAGGAAGTGTGAGATTGATGTTGTTTCTTATACTACTCTGGTTCATGGGTTTGGTGTTGTCGGGGAGGTTAAGAAGGCGAGGAGGATTTTCGATGGGATGGTTGAGGAGGGGGTCCTGCCTTCGGTTGCGACTTACAATGCATTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAATGCGGTGGTGGTTTTTGAGGAGATGGTGAGTAAGGGTTATGTGCCTAATGTGACGACGTATAATGTGTTGATTAGAGGGCTGTGTCATGCTGGTGATATGGAGAGGGGGATGGAGTTGATGGGGAGGATGAAGGGTGATGAGTGTGAGCCGAATGTTCAGACGTATAATGTTGTGATTCGGTACTTTTGTGATGATGGGGAGATTGATAAGGCGTTGGATGTGTTTGAGAAGATGGGTAGGGGAGAGTGCTTGCCTAATTTGGATACATACAATGTGTTGATTAGTGCCATGTTTGTGAGGAAGAAACCTGAAGATTTGTTAGTGGCAGGGAAGTTGCTGATTGAGATGGTTGATAGAGGATTTTTGCCCCGCAAGTACACTTTTAATCGGGTTCTGGATGGGCTTTTGTTAACTGGTAATCAAGGTTTTGCAAAAGAGATTCTGAGATTGCAGAGCAAATGTGGCCGTCTTCCTCGTCAGGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCTGTAATGAGAACTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTTGTCCTCCATGAATCTTATTGAAAAGACCCACACAGCAGATACAAGGAAGCCGGCATACAAATGGTTGGGATTGAAAGGAAAAGATGCCGTGAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGACATCACAAACGTCAGTTGTAAGAGGGGAAAAGTAGAATCTTCTACTGCTGGGAAATTGGAAGCTCAGAAACAAAAGCAACATGAGACTACAGTACGGCAACGTGAGAGACGTGAGAGCATAGTACGTAAGGTTGATAGGAACAATTTAGAGGACTCGAAAGAAAATACAAAGAGCTACCAGTTTGGTCCTTTTGCTCCAGTTACTATTGCCAGAGCTGGGAATTTCAACATGAAGAAGGTTGACTGGGACAATTTGTCGTCTACTTACCGTCCCCAGTATCAGAATCAAGCTTTGAAGGAGCTGTTTTCTCATTACATGGAAGCATGGAAATCATGGTACTCTGAAGTTGTTGAGAAGCCAATCCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

567

Amino Acids

64.57

Weight (kDa)

9.36

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	75 - 124	2.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	78 - 124	6.4e-12	PPR repeat family
PPR_3	PF13812	101 - 146	8.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	108 - 141	7.2e-08	PPR repeat
PPR_2	PF13041	112 - 159	6.8e-18	PPR repeat family
PPR	PF01535	115 - 145	5.9e-09	PPR repeat
PPR_3	PF13812	138 - 194	2.1e-12	Pentatricopeptide repeat domain
TPR_24	PF23276	140 - 241	4.3e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	144 - 176	2.7e-06	PPR repeat
PPR_2	PF13041	148 - 188	1.2e-08	PPR repeat family
PPR_long	PF17177	164 - 295	5.6e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	179 - 211	5.8e-09	PPR repeat
PPR_2	PF13041	182 - 231	3.5e-18	PPR repeat family
PPR	PF01535	186 - 214	8e-07	PPR repeat
PPR_3	PF13812	206 - 264	5.7e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	213 - 246	4.1e-09	PPR repeat
PPR_2	PF13041	217 - 266	7.4e-15	PPR repeat family
PPR	PF01535	221 - 250	6.2e-07	PPR repeat
PPR_1	PF12854	249 - 280	1.9e-09	PPR repeat
PPR_2	PF13041	252 - 299	1.6e-14	PPR repeat family
WHD_E2F_TDP	PF02319	362 - 422	1.8e-12	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	1592
AccII	CGCG	1 cut(s)	6
AciI	CCGC	5 cut(s)	10, 66, 608, 976, 1171
AcoI	YGGCCR	1 cut(s)	1069
AcsI	RAATTY	2 cut(s)	136, 1552
AcuI	CTGAAG	3 cut(s)	936, 1281, 1695
AfaI	GTAC	6 cut(s)	59, 788, 983, 1425, 1455, 1670
AfiI	CCNNNNNNNGG	2 cut(s)	547, 1548
AgsI	TTSAA	7 cut(s)	136, 145, 185, 1217, 1270, 1558, 1627
AhdI	GACNNNNNGTC	1 cut(s)	1585
AjiI	CACGTC	1 cut(s)	1442
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	1409, 1432
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	19, 1069
ApeKI	GCWGC	1 cut(s)	1112
ApoI	RAATTY	2 cut(s)	136, 1552
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	4 cut(s)	20, 26, 538, 1517
AsuC2I	CCSGG	3 cut(s)	14, 23, 24
AsuHPI	GGTGA	3 cut(s)	643, 710, 752
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	26, 538, 1517
AxyI	CCTNAGG	2 cut(s)	126, 288
BaeGI	GKGCMC	1 cut(s)	125
BaeI	ACNNNNGTAYC	2 cut(s)	778, 811
BanI	GGYRCC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	1235, 1267
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	1099
BceAI	ACGGC	3 cut(s)	1056, 1268, 1442
BciVI	GTATCC	1 cut(s)	862
BcnI	CCSGG	3 cut(s)	14, 23, 24
BcoDI	GTCTC	2 cut(s)	1409, 1432
BfaI	CTAG	1 cut(s)	1308
BfmI	CTRYAG	1 cut(s)	1419
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	862
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	66, 1113
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	67, 1114
Bme1390I	CCNGG	3 cut(s)	14, 23, 24
Bme18I	GGWCC	3 cut(s)	26, 538, 1517
BmeRI	GACNNNNNGTC	1 cut(s)	1585
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	1442
BmgT120I	GGNCC	4 cut(s)	20, 26, 538, 1517
BmiI	GGNNCC	3 cut(s)	27, 122, 539
BmrFI	CCNGG	3 cut(s)	14, 23, 24
BmrI	ACTGGG	2 cut(s)	1585, 1600
BmsI	GCATC	4 cut(s)	348, 1123, 1154, 1270
BmuI	ACTGGG	2 cut(s)	1585, 1600
BpiI	GAAGAC	1 cut(s)	1067
BpmI	CTGGAG	1 cut(s)	1512
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	3 cut(s)	14, 23, 24
BsaAI	YACGTR	1 cut(s)	1457
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 1548
Bse118I	RCCGGY	2 cut(s)	68, 1246
Bse1I	ACTGG	5 cut(s)	1024, 1510, 1529, 1580, 1606
Bse21I	CCTNAGG	2 cut(s)	126, 288
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	6 cut(s)	528, 720, 738, 829, 1009, 1138
BseLI	CCNNNNNNNGG	2 cut(s)	547, 1548
BseMII	CTCAG	3 cut(s)	140, 1040, 1409
BseNI	ACTGG	5 cut(s)	1024, 1510, 1529, 1580, 1606
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	3 cut(s)	520, 545, 638
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	1099
BseYI	CCCAGC	3 cut(s)	380, 1379, 1547
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	21, 1071
BshNI	GGYRCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	13, 23, 69, 1247
BslFI	GGGAC	2 cut(s)	1587, 1592
BslI	CCNNNNNNNGG	2 cut(s)	547, 1548
BsmAI	GTCTC	2 cut(s)	1409, 1432
BsmBI	CGTCTC	1 cut(s)	1432
BsmFI	GGGAC	2 cut(s)	1587, 1592
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	21, 1071
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	125, 165
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	10, 66, 608, 976, 1171
BspANI	GGCC	2 cut(s)	21, 1071
BspCNI	CTCAG	3 cut(s)	139, 1041, 1408
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	27, 122, 539
BspMI	ACCTGC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	68, 1246
BsrI	ACTGG	5 cut(s)	1024, 1510, 1529, 1580, 1606
BssAI	RCCGGY	2 cut(s)	68, 1246
BssECI	CCNNGG	1 cut(s)	22
BssHII	GCGCGC	1 cut(s)	4
Bst4CI	ACNGT	3 cut(s)	151, 1423, 1601
Bst6I	CTCTTC	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	1142
BstBAI	YACGTR	1 cut(s)	1457
BstC8I	GCNNGC	5 cut(s)	6, 10, 70, 857, 1248
BstDEI	CTNAG	6 cut(s)	126, 174, 288, 374, 1049, 1395
BstF5I	GGATG	6 cut(s)	528, 720, 738, 829, 1009, 1138
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstMAI	GTCTC	2 cut(s)	1409, 1432
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 47, 1068, 1142
BstSCI	CCNGG	3 cut(s)	12, 21, 22
BstSFI	CTRYAG	1 cut(s)	1419
BstSLI	GKGCMC	1 cut(s)	125
BstSNI	TACGTA	1 cut(s)	1457
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	1099
BstV2I	GAAGAC	1 cut(s)	1067
Bsu36I	CCTNAGG	2 cut(s)	126, 288
BsuI	GTATCC	1 cut(s)	862
BsuRI	GGCC	2 cut(s)	21, 1071
BtgZI	GCGATG	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	1442
BtsCI	GGATG	6 cut(s)	528, 720, 738, 829, 1009, 1138
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	5 cut(s)	6, 10, 70, 857, 1248
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	2 cut(s)	68, 1246
Cfr13I	GGNCC	4 cut(s)	20, 26, 538, 1517
Cfr9I	CCCGGG	1 cut(s)	22
Csp6I	GTAC	6 cut(s)	58, 787, 982, 1424, 1454, 1669
CviQI	GTAC	6 cut(s)	58, 787, 982, 1424, 1454, 1669
DdeI	CTNAG	6 cut(s)	126, 174, 288, 374, 1049, 1395
DriI	GACNNNNNGTC	1 cut(s)	1585
EaeI	YGGCCR	1 cut(s)	1069
Eam1104I	CTCTTC	1 cut(s)	419
Eam1105I	GACNNNNNGTC	1 cut(s)	1585
EarI	CTCTTC	1 cut(s)	419
EciI	GGCGGA	1 cut(s)	1186
Eco105I	TACGTA	1 cut(s)	1457
Eco47I	GGWCC	3 cut(s)	26, 538, 1517
Eco57I	CTGAAG	3 cut(s)	936, 1281, 1695
Eco81I	CCTNAGG	2 cut(s)	126, 288
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	136
EcoT22I	ATGCAT	3 cut(s)	111, 568, 1147
Esp3I	CGTCTC	1 cut(s)	1432
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	1587, 1592
FauI	CCCGC	2 cut(s)	17, 983
FblI	GTMKAC	1 cut(s)	1592
Fnu4HI	GCNGC	2 cut(s)	66, 1113
FokI	GGATG	6 cut(s)	535, 727, 745, 836, 1016, 1145
Fsp4HI	GCNGC	2 cut(s)	66, 1113
FspBI	CTAG	1 cut(s)	1308
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	2 cut(s)	66, 1113
GsaI	CCCAGC	3 cut(s)	384, 1383, 1551
GsuI	CTGGAG	1 cut(s)	1512
HaeIII	GGCC	2 cut(s)	21, 1071
HapII	CCGG	4 cut(s)	13, 23, 69, 1247
HhaI	GCGC	2 cut(s)	6, 8
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HincII	GTYRAC	2 cut(s)	1017, 1573
HindII	GTYRAC	2 cut(s)	1017, 1573
HindIII	AAGCTT	1 cut(s)	1620
HpaI	GTTAAC	1 cut(s)	1017
HpaII	CCGG	4 cut(s)	13, 23, 69, 1247
HphI	GGTGA	3 cut(s)	643, 710, 752
Hpy166II	GTNNAC	4 cut(s)	984, 1017, 1573, 1593
Hpy188I	TCNGA	7 cut(s)	30, 765, 1050, 1300, 1398, 1614, 1675
Hpy188III	TCNNGA	4 cut(s)	128, 155, 1001, 1308
Hpy8I	GTNNAC	4 cut(s)	984, 1017, 1573, 1593
Hpy99I	CGWCG	2 cut(s)	65, 664
HpyAV	CCTTC	7 cut(s)	46, 493, 555, 583, 730, 1561, 1621
HpyCH4III	ACNGT	3 cut(s)	151, 1423, 1601
HpyCH4IV	ACGT	7 cut(s)	60, 662, 767, 1341, 1432, 1441, 1456
HpyCH4V	TGCA	8 cut(s)	109, 566, 1037, 1057, 1115, 1136, 1145, 1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 47, 1068, 1142
HpyF3I	CTNAG	6 cut(s)	126, 174, 288, 374, 1049, 1395
HpySE526I	ACGT	7 cut(s)	60, 662, 767, 1341, 1432, 1441, 1456
HspAI	GCGC	2 cut(s)	4, 6
KroI	GCCGGC	2 cut(s)	68, 1246
KroNI	GCCGGC	2 cut(s)	70, 1248
KspAI	GTTAAC	1 cut(s)	1017
LmnI	GCTCC	2 cut(s)	1531, 1630
Lsp1109I	GCAGC	1 cut(s)	1099
LweI	GCATC	4 cut(s)	348, 1123, 1154, 1270
MaeI	CTAG	1 cut(s)	1308
MaeII	ACGT	7 cut(s)	60, 662, 767, 1341, 1432, 1441, 1456
MaeIII	GTNAC	4 cut(s)	242, 343, 655, 1531
MboII	GAAGA	9 cut(s)	231, 433, 436, 847, 919, 929, 1067, 1362, 1576
MhlI	GDGCHC	2 cut(s)	125, 165
MluCI	AATT	7 cut(s)	136, 196, 862, 1385, 1474, 1552, 1582
MlyI	GAGTC	3 cut(s)	277, 1313, 1478
MmeI	TCCRAC	1 cut(s)	801
Mph1103I	ATGCAT	3 cut(s)	111, 568, 1147
MroNI	GCCGGC	2 cut(s)	68, 1246
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	8 cut(s)	204, 258, 276, 363, 390, 495, 990, 1016
MslI	CAYNNNNRTG	4 cut(s)	114, 696, 899, 1255
MspI	CCGG	4 cut(s)	13, 23, 69, 1247
MspR9I	CCNGG	3 cut(s)	14, 23, 24
Mva1269I	GAATGC	1 cut(s)	610
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	18, 47, 1068, 1142
NaeI	GCCGGC	2 cut(s)	70, 1248
NciI	CCSGG	3 cut(s)	14, 23, 24
NgoMIV	GCCGGC	2 cut(s)	68, 1246
NlaIV	GGNNCC	3 cut(s)	27, 122, 539
NmeAIII	GCCGAG	2 cut(s)	76, 360
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	3 cut(s)	111, 568, 1147
PauI	GCGCGC	1 cut(s)	4
PcsI	WCGNNNNNNNCGW	1 cut(s)	1438
PctI	GAATGC	1 cut(s)	610
PdiI	GCCGGC	2 cut(s)	70, 1248
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	8 cut(s)	327, 571, 781, 1045, 1091, 1207, 1367, 1615
PkrI	GCNGC	2 cut(s)	67, 1114
PleI	GAGTC	3 cut(s)	277, 1312, 1478
PpsI	GAGTC	3 cut(s)	277, 1312, 1478
Ppu21I	YACGTR	1 cut(s)	1457
PpuMI	RGGWCCY	1 cut(s)	538
PsiI	TTATAA	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	538
PspFI	CCCAGC	3 cut(s)	380, 1379, 1547
PspN4I	GGNNCC	3 cut(s)	27, 122, 539
PspPI	GGNCC	4 cut(s)	20, 26, 538, 1517
PspPPI	RGGWCCY	1 cut(s)	538
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	6 cut(s)	59, 788, 983, 1425, 1455, 1670
RsaNI	GTAC	6 cut(s)	58, 787, 982, 1424, 1454, 1669
RseI	CAYNNNNRTG	4 cut(s)	114, 696, 899, 1255
SaqAI	TTAA	8 cut(s)	204, 258, 276, 363, 390, 495, 990, 1016
SatI	GCNGC	2 cut(s)	66, 1113
Sau96I	GGNCC	4 cut(s)	20, 26, 538, 1517
SchI	GAGTC	3 cut(s)	277, 1313, 1478
ScrFI	CCNGG	3 cut(s)	14, 23, 24
SduI	GDGCHC	2 cut(s)	125, 165
SfaNI	GCATC	4 cut(s)	348, 1123, 1154, 1270
SfcI	CTRYAG	1 cut(s)	1419
SinI	GGWCC	3 cut(s)	26, 538, 1517
SmaI	CCCGGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	4 cut(s)	114, 696, 899, 1255
SnaBI	TACGTA	1 cut(s)	1457
Sse9I	AATT	7 cut(s)	136, 196, 862, 1385, 1474, 1552, 1582
SsiI	CCGC	5 cut(s)	10, 66, 608, 976, 1171
SspMI	CTAG	1 cut(s)	1308
StyD4I	CCNGG	3 cut(s)	12, 21, 22
TaaI	ACNGT	3 cut(s)	151, 1423, 1601
TaiI	ACGT	7 cut(s)	63, 665, 770, 1344, 1435, 1444, 1459
TaqI	TCGA	3 cut(s)	330, 516, 1487
TasI	AATT	7 cut(s)	136, 196, 862, 1385, 1474, 1552, 1582
TatI	WGTACW	1 cut(s)	981
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	8 cut(s)	327, 571, 781, 1045, 1091, 1207, 1367, 1615
Tru1I	TTAA	8 cut(s)	204, 258, 276, 363, 390, 495, 990, 1016
Tru9I	TTAA	8 cut(s)	204, 258, 276, 363, 390, 495, 990, 1016
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	1 cut(s)	1112
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	7 cut(s)	126, 434, 458, 749, 1122, 1220, 1577
TspMI	CCCGGG	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	26, 538, 1517
XapI	RAATTY	2 cut(s)	136, 1552
XbaI	TCTAGA	1 cut(s)	1307
XmaI	CCCGGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	1592
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	1 cut(s)	1308
Zsp2I	ATGCAT	3 cut(s)	111, 568, 1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.