Rroxscaffold_1G00027620

Elongation factor G C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000573
Physical Location & Seq
Forward (+)
35016480 .. 35017235
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027620.1

Sequence Viewer

Length: 465 bp
ATGGATCCCATCGGCCTCGAGTACGAGCGCGGCATCACCATCACCTCCAAGGTTGCGTCGGTTCTCTGGAAGGAGAATGAGCTAATCACGGTGATACGCCCGGACATGCGGACCGTGGTGGTGAAGTGGAGCTGGTTGTTGAGCAGGCTAGAAGAGGAGCTTTGGGACGGATCGATGAATGCAAGTAGTAAGAGCAAGGTTGTGGAGAAGGGAGTTCAAGATCAAGGTGAGGTTGGGAACTGCAATTCGAATGGCCGTGGGGCGAAGGAGAGTTCGAAGAGCGGCCAGCTTGGTCCTTTCGCTCCGGTGGCAGTTCCAAGAACTAAGAAAGGTGTTGACATCAACAAGGTTGCCGGGAGAGTCTTGGACTCTTGGGGCTTATTATTGGCCTCGGTATCGGAACGCCAAGGGAAAAAGAAGAGTTCCGAAACTTCATGCCACAAGCCATTACGTGCCTGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

154

Amino Acids

16.9

Weight (kDa)

9.45

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48160 AT3G48160
fragaria_vesca FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis pycom06g16070 pycom14g15550
rosa_chinensis RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata RLG00000005323 RLG00000033775
rosa_multiflora Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 1 cut(s) 30
AciI CCGC 3 cut(s) 30, 109, 282
AclWI GGATC 2 cut(s) 12, 178
AcoI YGGCCR 2 cut(s) 253, 283
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 455
AluBI AGCT 4 cut(s) 82, 132, 160, 289
AluI AGCT 4 cut(s) 82, 132, 160, 289
AlwI GGATC 2 cut(s) 12, 178
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 4 cut(s) 13, 253, 283, 387
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 111, 293
AsuC2I CCSGG 2 cut(s) 101, 355
AsuHPI GGTGA 5 cut(s) 28, 34, 103, 133, 239
AsuII TTCGAA 2 cut(s) 248, 275
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 2 cut(s) 111, 293
BamHI GGATCC 1 cut(s) 4
BccI CCATC 2 cut(s) 17, 47
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 457
BcnI CCSGG 2 cut(s) 101, 355
BfaI CTAG 1 cut(s) 149
BisI GCNGC 2 cut(s) 31, 283
BlsI GCNGC 2 cut(s) 32, 284
Bme1390I CCNGG 3 cut(s) 101, 355, 457
Bme18I GGWCC 2 cut(s) 111, 293
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 111, 293
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 101, 355, 457
BmsI GCATC 1 cut(s) 42
Bpu14I TTCGAA 2 cut(s) 248, 275
BpuMI CCSGG 2 cut(s) 101, 355
Bsa29I ATCGAT 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 48, 114, 256, 390, 406
BsaWI WCCGGW 1 cut(s) 304
BseBI CCWGG 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 5 cut(s) 48, 114, 256, 390, 406
BseRI GAGGAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 4 cut(s) 15, 255, 285, 389
BshVI ATCGAT 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 3 cut(s) 101, 305, 354
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 4 cut(s) 15, 255, 285, 389
BsoBI CYCGRG 1 cut(s) 17
Bsp119I TTCGAA 2 cut(s) 248, 275
Bsp143I GATC 3 cut(s) 4, 170, 220
BspACI CCGC 3 cut(s) 30, 109, 282
BspANI GGCC 4 cut(s) 15, 255, 285, 389
BspDI ATCGAT 1 cut(s) 173
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 178
BspQI GCTCTTC 1 cut(s) 272
BspT104I TTCGAA 2 cut(s) 248, 275
BsrBI CCGCTC 1 cut(s) 282
BssECI CCNNGG 5 cut(s) 48, 114, 256, 390, 406
BssMI GATC 3 cut(s) 4, 170, 220
BssT1I CCWWGG 2 cut(s) 48, 406
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 91, 115
Bst6I CTCTTC 3 cut(s) 147, 272, 413
BstBAI YACGTR 1 cut(s) 452
BstBI TTCGAA 2 cut(s) 248, 275
BstC8I GCNNGC 2 cut(s) 146, 287
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 114, 256
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 7, 173, 223
BstMBI GATC 3 cut(s) 4, 170, 220
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 3 cut(s) 99, 353, 455
BstUI CGCG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 173
BsuRI GGCC 4 cut(s) 15, 255, 285, 389
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 114, 256
Cac8I GCNNGC 2 cut(s) 146, 287
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 111, 293
ClaI ATCGAT 1 cut(s) 173
CpoI CGGWCCG 1 cut(s) 111
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 22
CspI CGGWCCG 1 cut(s) 111
CviAII CATG 2 cut(s) 106, 435
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 324
DpnI GATC 3 cut(s) 6, 172, 222
DpnII GATC 3 cut(s) 4, 170, 220
EaeI YGGCCR 2 cut(s) 253, 283
Eam1104I CTCTTC 3 cut(s) 147, 272, 413
EarI CTCTTC 3 cut(s) 147, 272, 413
Eco130I CCWWGG 2 cut(s) 48, 406
Eco47I GGWCC 2 cut(s) 111, 293
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 455
EcoT14I CCWWGG 2 cut(s) 48, 406
ErhI CCWWGG 2 cut(s) 48, 406
FaeI CATG 2 cut(s) 109, 438
FaiI YATR 2 cut(s) 107, 436
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 105, 434
Fnu4HI GCNGC 2 cut(s) 31, 283
Fsp4HI GCNGC 2 cut(s) 31, 283
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 29
GluI GCNGC 2 cut(s) 31, 283
HaeIII GGCC 4 cut(s) 15, 255, 285, 389
HapII CCGG 3 cut(s) 101, 305, 354
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 30
Hin1II CATG 2 cut(s) 109, 438
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 2 cut(s) 360, 368
HpaII CCGG 3 cut(s) 101, 305, 354
HphI GGTGA 5 cut(s) 28, 34, 103, 133, 239
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 400, 427
Hpy188III TCNNGA 3 cut(s) 67, 218, 462
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 64, 202, 259
HpyCH4III ACNGT 2 cut(s) 91, 115
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 2 cut(s) 182, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 2 cut(s) 109, 438
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 3 cut(s) 4, 170, 220
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 3 cut(s) 129, 157, 307
LpnPI CCDG 8 cut(s) 52, 114, 118, 130, 299, 318, 367, 442
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 451
MalI GATC 3 cut(s) 6, 172, 222
MbiI CCGCTC 1 cut(s) 282
MboI GATC 3 cut(s) 4, 170, 220
MboII GAAGA 3 cut(s) 164, 289, 430
MflI RGATCY 1 cut(s) 4
MluCI AATT 1 cut(s) 244
MlyI GAGTC 2 cut(s) 362, 369
MnlI CCTC 5 cut(s) 26, 55, 148, 223, 400
MspI CCGG 3 cut(s) 101, 305, 354
MspR9I CCNGG 3 cut(s) 101, 355, 457
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 2 cut(s) 101, 355
NdeII GATC 3 cut(s) 4, 170, 220
NlaIII CATG 2 cut(s) 109, 438
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 109
NspV TTCGAA 2 cut(s) 248, 275
PaeR7I CTCGAG 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 272
PctI GAATGC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 32, 284
PleI GAGTC 2 cut(s) 362, 368
PpsI GAGTC 2 cut(s) 362, 368
Ppu21I YACGTR 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 111, 293
PspXI VCTCGAGB 1 cut(s) 17
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
Rsr2I CGGWCCG 1 cut(s) 111
RsrII CGGWCCG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 272
SatI GCNGC 2 cut(s) 31, 283
Sau3AI GATC 3 cut(s) 4, 170, 220
Sau96I GGNCC 2 cut(s) 111, 293
SchI GAGTC 2 cut(s) 362, 369
ScrFI CCNGG 3 cut(s) 101, 355, 457
SfaNI GCATC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 17
SfuI TTCGAA 2 cut(s) 248, 275
SinI GGWCC 2 cut(s) 111, 293
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 244
SsiI CCGC 3 cut(s) 30, 109, 282
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 3 cut(s) 99, 353, 455
StyI CCWWGG 2 cut(s) 48, 406
TaaI ACNGT 2 cut(s) 91, 115
TaiI ACGT 1 cut(s) 454
TaqI TCGA 4 cut(s) 18, 173, 248, 275
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 33, 285
TspDTI ATGAA 2 cut(s) 191, 423
TspGWI ACGGA 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 111, 293
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 17
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.