Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Reverse (-)

31771776 .. 31773131

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCCTCCTCCGCCGCCGCCGCCGTCGATCGTCCTCCGGCCACCACCACCACCACCCGCCGCGACGCCTCCTACAGCCGAAAGCAGAAGTCCCTGAGCCTCCTCTGCTCCAATTTCCTCAGCCTCTACAACCGCGACGACGGCGCCACTGCCCTGATCGGCCTAGACGACGCCGCCTCCCGCCTCGGCGTCGTCCGCCGCCGGATCTACGACATCGTCAACGTGCTGGAGAGCGTCGGACTGCTGTCAAGAAAGTCCAAGAACACGTACACGTGGAAGGGTTTCGGCGCGGTCCCTAACGCCCTGAAGGAGCTCAGAGAAGAAGGCCTGGATCTGACTCCGATCCCGGCGGCCTGCAATAACAACCCCCTGGATGAGACCAAGAGGGAAAAGTCTCTGGCGCTTCTGGCGCAGAATTTCGTGAAGCTGTTCGTGTGTACCGGATCGGAATCGGAATCGATTTCTCTTGATGAAGCTGCAAAATTACTGCTTGGAGTTGGAGATGCTCACAATGTATCAGTGATGAGGACAAAGGTGAGGAGGATCTATGACATTGCGAATGTGTTATCGTCGGTGAATTTGATTGAGAAGACTCATACGGCGGATACAGGGAAGCCGGCGTACAGGTGGTTGGGGCTGAATGGGAGAAGAGATGGTTTGAATTTGAATTCGGAGCTGAATTCGGAGCAGGCTAAGAAGAGGAGCTTTGGGACAGATCTGACGAATGCGAGTAGTAAGAGGAGCAAGGTTGTGGAGAAGAGAGTTCAAGATCAGGGTGAGGTTGAGAACTGCAATTCGGATGGCGGTGGTGGGGCGAAGGAGAGTTCGAAGAGCTACCAGTTTGGTCCTTTCGCTCCGGTGGCGGTTCCAAGAGCTAGGAAGGGTGTTGACGTCAACAAGGTTTGCTGGGAGAGTCTGGGGGCTTATTATCGGCCTCAGTATCAGAACCAAGCGATGAAGGAGCTGTTTTCGCATTATAGGGAAGCGTGGATGTTGTGGAACTCTCAAGTTGCTGAGAAGAATCCAATTCAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

346

Amino Acids

38.1

Weight (kDa)

9.36

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	28 - 94	8.4e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	129 - 212	2.3e-18	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	894
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	3 cut(s)	63, 135, 290
AclWI	GGATC	5 cut(s)	212, 337, 339, 451, 551
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	5 cut(s)	415, 577, 661, 667, 679
AcuI	CTGAAG	1 cut(s)	326
AcvI	CACGTG	1 cut(s)	273
AcyI	GRCGYC	5 cut(s)	66, 144, 171, 189, 891
AfaI	GTAC	3 cut(s)	269, 439, 623
AflIII	ACRYGT	2 cut(s)	264, 270
AgsI	TTSAA	3 cut(s)	661, 667, 767
AjnI	CCWGG	2 cut(s)	327, 369
AjuI	GAANNNNNNNTTGG	1 cut(s)	1018
AluBI	AGCT	8 cut(s)	313, 427, 476, 676, 705, 834, 875, 964
AluI	AGCT	8 cut(s)	313, 427, 476, 676, 705, 834, 875, 964
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	371, 399
AlwI	GGATC	5 cut(s)	212, 337, 339, 451, 551
AoxI	GGCC	5 cut(s)	39, 160, 325, 351, 932
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	5 cut(s)	415, 577, 661, 667, 679
Asp700I	GAANNNNTTC	2 cut(s)	281, 428
AspLEI	GCGC	4 cut(s)	146, 290, 403, 412
AspS9I	GGNCC	2 cut(s)	292, 845
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	547, 586, 788
AsuII	TTCGAA	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	292, 845
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
BbrPI	CACGTG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	647, 794
BceAI	ACGGC	3 cut(s)	8, 157, 615
BciT130I	CCWGG	2 cut(s)	329, 371
BciVI	GTATCC	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	371, 399
BfaI	CTAG	2 cut(s)	164, 876
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	2 cut(s)	147, 404
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	8 cut(s)	15, 18, 21, 61, 174, 199, 351, 477
BlsI	GCNGC	8 cut(s)	16, 19, 22, 62, 175, 200, 352, 478
Bme1390I	CCNGG	3 cut(s)	329, 347, 371
Bme18I	GGWCC	2 cut(s)	292, 845
BmgT120I	GGNCC	2 cut(s)	292, 845
BmiI	GGNNCC	3 cut(s)	145, 294, 867
BmrFI	CCNGG	3 cut(s)	329, 347, 371
BmsI	GCATC	1 cut(s)	493
BoxI	GACNNNNGTC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	95, 119
Bpu14I	TTCGAA	1 cut(s)	827
BpuEI	CTTGAG	1 cut(s)	990
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	458
BsaAI	YACGTR	2 cut(s)	267, 273
BsaBI	GATNNNNATC	1 cut(s)	448
BsaHI	GRCGYC	5 cut(s)	66, 144, 171, 189, 891
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	184, 369
BsaWI	WCCGGW	2 cut(s)	440, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	329, 371
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	184, 369
BseGI	GGATG	3 cut(s)	379, 805, 996
BseJI	GATNNNNATC	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	5 cut(s)	86, 133, 328, 950, 1005
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	4 cut(s)	92, 553, 715, 754
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	906
Bsh1236I	CGCG	3 cut(s)	63, 135, 290
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	5 cut(s)	41, 162, 327, 353, 934
BshNI	GGYRCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	6 cut(s)	38, 202, 347, 441, 617, 857
BslFI	GGGAC	3 cut(s)	76, 278, 724
BsmAI	GTCTC	2 cut(s)	371, 399
BsmFI	GGGAC	3 cut(s)	76, 278, 724
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	5 cut(s)	41, 162, 327, 353, 934
Bso31I	GGTCTC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
BspANI	GGCC	5 cut(s)	41, 162, 327, 353, 934
BspCNI	CTCAG	5 cut(s)	87, 132, 327, 949, 1006
BspDI	ATCGAT	1 cut(s)	458
BspFNI	CGCG	3 cut(s)	63, 135, 290
BspLI	GGNNCC	3 cut(s)	145, 294, 867
BspPI	GGATC	5 cut(s)	212, 337, 339, 451, 551
BspQI	GCTCTTC	1 cut(s)	824
BspT104I	TTCGAA	1 cut(s)	827
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	838
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	184, 369
BssMI	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
BssNI	GRCGYC	5 cut(s)	66, 144, 171, 189, 891
Bst2UI	CCWGG	2 cut(s)	329, 371
Bst6I	CTCTTC	4 cut(s)	643, 692, 752, 824
BstACI	GRCGYC	5 cut(s)	66, 144, 171, 189, 891
BstBAI	YACGTR	2 cut(s)	267, 273
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	355, 618, 690
BstDEI	CTNAG	6 cut(s)	95, 119, 314, 693, 936, 1014
BstF5I	GGATG	3 cut(s)	379, 805, 996
BstFNI	CGCG	3 cut(s)	63, 135, 290
BstH2I	RGCGCY	2 cut(s)	147, 404
BstHHI	GCGC	4 cut(s)	146, 290, 403, 412
BstKTI	GATC	9 cut(s)	31, 159, 207, 334, 345, 446, 546, 718, 772
BstMAI	GTCTC	2 cut(s)	371, 399
BstMBI	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 105, 141, 195, 407, 409, 860, 970
BstNI	CCWGG	2 cut(s)	329, 371
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	327, 345, 369
BstSFI	CTRYAG	1 cut(s)	73
BstUI	CGCG	3 cut(s)	63, 135, 290
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	4 cut(s)	204, 331, 543, 715
BstYI	RGATCY	4 cut(s)	204, 331, 543, 715
Bsu15I	ATCGAT	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	5 cut(s)	41, 162, 327, 353, 934
BsuTUI	ATCGAT	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	968
BtsCI	GGATG	3 cut(s)	379, 805, 996
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	147, 525
Cac8I	GCNNGC	3 cut(s)	355, 618, 690
CfoI	GCGC	4 cut(s)	146, 290, 403, 412
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	2 cut(s)	292, 845
ClaI	ATCGAT	1 cut(s)	458
CseI	GACGC	4 cut(s)	74, 178, 179, 223
Csp6I	GTAC	3 cut(s)	268, 438, 622
CviQI	GTAC	3 cut(s)	268, 438, 622
DdeI	CTNAG	6 cut(s)	95, 119, 314, 693, 936, 1014
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	9 cut(s)	30, 158, 206, 333, 344, 445, 545, 717, 771
DpnII	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	643, 692, 752, 824
EarI	CTCTTC	4 cut(s)	643, 692, 752, 824
EciI	GGCGGA	2 cut(s)	185, 617
Ecl136II	GAGCTC	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	292, 845
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	313
EcoRI	GAATTC	2 cut(s)	667, 679
EcoRII	CCWGG	2 cut(s)	327, 369
EcoT38I	GRGCYC	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaiI	YATR	3 cut(s)	549, 597, 978
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	3 cut(s)	76, 278, 724
FauI	CCCGC	2 cut(s)	65, 188
Fnu4HI	GCNGC	8 cut(s)	15, 18, 21, 61, 174, 199, 351, 477
FokI	GGATG	3 cut(s)	386, 812, 1003
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	8 cut(s)	15, 18, 21, 61, 174, 199, 351, 477
FspBI	CTAG	2 cut(s)	164, 876
GlaI	GCGC	4 cut(s)	145, 289, 402, 411
GluI	GCNGC	8 cut(s)	15, 18, 21, 61, 174, 199, 351, 477
GsaI	CCCAGC	1 cut(s)	910
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	2 cut(s)	147, 404
HaeIII	GGCC	5 cut(s)	41, 162, 327, 353, 934
HapII	CCGG	6 cut(s)	38, 202, 347, 441, 617, 857
HgaI	GACGC	4 cut(s)	74, 178, 179, 223
HhaI	GCGC	4 cut(s)	146, 290, 403, 412
Hin1I	GRCGYC	5 cut(s)	66, 144, 171, 189, 891
Hin6I	GCGC	4 cut(s)	144, 288, 401, 410
HinP1I	GCGC	4 cut(s)	144, 288, 401, 410
HincII	GTYRAC	3 cut(s)	220, 889, 895
HindII	GTYRAC	3 cut(s)	220, 889, 895
HinfI	GANTC	6 cut(s)	337, 449, 455, 592, 913, 1021
HpaII	CCGG	6 cut(s)	38, 202, 347, 441, 617, 857
HphI	GGTGA	3 cut(s)	547, 586, 788
Hpy166II	GTNNAC	5 cut(s)	220, 270, 438, 889, 895
Hpy188III	TCNNGA	5 cut(s)	249, 421, 467, 767, 1038
Hpy8I	GTNNAC	5 cut(s)	220, 270, 438, 889, 895
Hpy99I	CGWCG	8 cut(s)	29, 68, 140, 143, 173, 194, 239, 574
HpyAV	CCTTC	6 cut(s)	271, 301, 317, 811, 874, 952
HpyCH4IV	ACGT	4 cut(s)	222, 266, 272, 891
HpyCH4V	TGCA	3 cut(s)	357, 479, 792
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 105, 141, 195, 407, 409, 860, 970
HpyF3I	CTNAG	6 cut(s)	95, 119, 314, 693, 936, 1014
HpySE526I	ACGT	4 cut(s)	222, 266, 272, 891
Hsp92I	GRCGYC	5 cut(s)	66, 144, 171, 189, 891
HspAI	GCGC	4 cut(s)	144, 288, 401, 410
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	616
KroNI	GCCGGC	1 cut(s)	618
Kzo9I	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	8 cut(s)	113, 310, 673, 685, 702, 741, 859, 961
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	164, 876
MaeII	ACGT	4 cut(s)	222, 266, 272, 891
MalI	GATC	9 cut(s)	30, 158, 206, 333, 344, 445, 545, 717, 771
MboI	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
MboII	GAAGA	7 cut(s)	332, 601, 660, 709, 769, 841, 1030
MflI	RGATCY	4 cut(s)	204, 331, 543, 715
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	9 cut(s)	112, 415, 482, 577, 661, 667, 679, 793, 1026
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	3 cut(s)	331, 586, 922
MmeI	TCCRAC	2 cut(s)	217, 478
MroNI	GCCGGC	1 cut(s)	616
MroXI	GAANNNNTTC	2 cut(s)	281, 428
MspI	CCGG	6 cut(s)	38, 202, 347, 441, 617, 857
MspR9I	CCNGG	3 cut(s)	329, 347, 371
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	2 cut(s)	329, 371
MvnI	CGCG	3 cut(s)	63, 135, 290
MwoI	GCNNNNNNNGC	8 cut(s)	20, 105, 141, 195, 407, 409, 860, 970
NaeI	GCCGGC	1 cut(s)	618
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
NgoMIV	GCCGGC	1 cut(s)	616
NlaIV	GGNNCC	3 cut(s)	145, 294, 867
NmeAIII	GCCGAG	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	827
PceI	AGGCCT	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	730
PdiI	GCCGGC	1 cut(s)	618
PdmI	GAANNNNTTC	2 cut(s)	281, 428
PfeI	GAWTC	3 cut(s)	449, 455, 1021
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	8 cut(s)	16, 19, 22, 62, 175, 200, 352, 478
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	3 cut(s)	331, 586, 921
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	3 cut(s)	331, 586, 921
Ppu21I	YACGTR	2 cut(s)	267, 273
PshAI	GACNNNNGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	327, 369
PspCI	CACGTG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	906
PspGI	CCWGG	2 cut(s)	327, 369
PspN4I	GGNNCC	3 cut(s)	145, 294, 867
PspPI	GGNCC	2 cut(s)	292, 845
PsuI	RGATCY	4 cut(s)	204, 331, 543, 715
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	269, 439, 623
RsaNI	GTAC	3 cut(s)	268, 438, 622
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	824
SatI	GCNGC	8 cut(s)	15, 18, 21, 61, 174, 199, 351, 477
Sau3AI	GATC	9 cut(s)	28, 156, 204, 331, 342, 443, 543, 715, 769
Sau96I	GGNCC	2 cut(s)	292, 845
SchI	GAGTC	3 cut(s)	331, 586, 922
ScrFI	CCNGG	3 cut(s)	329, 347, 371
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	827
SinI	GGWCC	2 cut(s)	292, 845
SmlI	CTYRAG	1 cut(s)	1005
SmoI	CTYRAG	1 cut(s)	1005
Sse9I	AATT	9 cut(s)	112, 415, 482, 577, 661, 667, 679, 793, 1026
SseBI	AGGCCT	1 cut(s)	327
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	164, 876
SstI	GAGCTC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	327, 345, 369
TaiI	ACGT	4 cut(s)	225, 269, 275, 894
TaqI	TCGA	3 cut(s)	27, 458, 827
TasI	AATT	9 cut(s)	112, 415, 482, 577, 661, 667, 679, 793, 1026
TauI	GCSGC	7 cut(s)	17, 20, 23, 63, 176, 201, 353
TfiI	GAWTC	3 cut(s)	449, 455, 1021
TscAI	CASTG	2 cut(s)	154, 525
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	486, 971
TspRI	CASTG	2 cut(s)	154, 525
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	292, 845
XapI	RAATTY	5 cut(s)	415, 577, 661, 667, 679
XmnI	GAANNNNTTC	2 cut(s)	281, 428
XspI	CTAG	2 cut(s)	164, 876
ZraI	GACGTC	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.