Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000573

Physical Location & Seq

Genomic Coordinates Forward (+)

65205513 .. 65208271

Gene Structure 2759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTCCTCCGCCGAACCCCCACCTCCTCCTCCACCGCCGCCTCCTCAACCGGAGACCGCTTCCAGGCACCACGCCTATAGCCGGAAGCAGAAGTCTCTCGGCCTCTTGTGCTCCAATTTCATTGCCTTGTACGATCGCGAAGGCGTCACCTCCGTCGGCCTAGACGACGCCGCTGCAAGATTAGGTGTGGAGAGGCGGCGGATCTACGATATCGTTAATGTGCTTGAGAGCGTTGGGGTTCTTTCGCGAAAGGCTAAGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTATTGCTTTACAGGAGCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCATGGCAATCTCCAGGGCAATGATGATCCGAAATGTTCACAGGGTTCAGATGATGAGGAAGGTGATGAGAGTGGTCCTGCAACTGGGAGTCAGAATGAGAACCCCGGTGTCAATCCCAAATCTTCAGGAAACTCGAAAAATGATAATAGAAGGGAAAAGTCTCTGGCACTTCTTACACAGAATTTTGTGAAGCTCTTCGTCTGCTCCACTGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCTGTAATGAGAACTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTTGTCCTCCATGAATCTTATTGAAAAGACCCACACAGCAGATACAAGGAAGCCGGCATACAAATGGTTGGGATTGAAAGGAAAAGATGCTGTGAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGACATCACAAATGTCAGTTGTAAGAGGGGAAAAGTAGAATCTTCTACTGCTGAGAAATTGGAAGCTCAGAAACAAAAGCTACATGAGAGTACAGTACGGCAACGTGAGAGCATAGTACGTAAGGTTGATAGGAACAATTTAGAGGACTTGAAAGAAAATACAAAGAGCTACCAGTTTGGCCCTTTTGCTCCAGTTACTATTGCCAGAGCTGGGAATTTCAACATGAAGAAGGTTGACTGGGACAGTTTGTCGTCTACTTACCGTCCCCAGTATCAGAATCAAGGAGCAGGAGGAAGTAGTGGGAGAAAGAGAAGAGAGGAGGAAAGAGAAATAATAAACAGAACAGGAGAGTATGGGATAGAAGAAGATCAAGAACAAGAGGAAGTTAGGTTTCCATTTGTAAATCGATTTAAGATTCAAGTATCCTCCATTAGGTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

414

Amino Acids

46.19

Weight (kDa)

8.92

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	29 - 93	4.1e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	167 - 246	2.9e-19	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48160 AT3G48160
fragaria_vesca	FvH4_3g21790 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330 FvH4_5g16330
malus_domestica	MD06G1181700.v1.1 MD14G1187600.v1.1
prunus_persica	Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1 Prupe.5G180000_v2.0.a1
pyrus_communis	pycom06g16070 pycom14g15550
rosa_chinensis	RchiOBHm_Chr2g0100091 RchiOBHm_Chr2g0131211 RchiOBHm_Chr2g0131231 RchiOBHm_Chr2g0155761 RchiOBHm_Chr5g0037341 RchiOBHm_Chr6g0286771 RchiOBHm_Chr7g0179801
rosa_laevigata	RLG00000005323 RLG00000033775
rosa_multiflora	Rmu_co8405049.1_g000002 Rmu_sc0003547.1_g000004 Rmu_sc0004156.1_g000008 Rmu_sc0007546.1_g000012 Rmu_sc0026307.1_g000001 Rmu_sc0032585.1_g000001 Rmu_ssc0000019.1_g000022
rosa_roxburghii	Rroxscaffold_1G00027620 Rroxscaffold_1G00027630 Rroxscaffold_1G00043630 Rroxscaffold_2G00107640 Rroxscaffold_3G00273460 Rroxscaffold_5G00347960 Rroxscaffold_5G00350580 Rroxscaffold_5G00366890 Rroxscaffold_6G00391730 Rroxscaffold_6G00392580 Rroxscaffold_7G00170270 Rroxscaffold_7G00170280
rosa_rugosa	Rorug02G0499800 Rorug04G0099000 Rorug04G0116000 Rorug05G0129300 Rorug05G0164200 Rorug06G0428300 Rorug06G0428400
rosa_samantha	Rh1DG306200 Rh2AG348600 Rh2CG139500 Rh2CG334400 Rh2CG334500 Rh2CG334700 Rh2DG139800 Rh2DG373800 Rh5BG255900 Rh5CG289000 Rh5DG264300 Rh5DG449300 Rh6AG295400 Rh6BG299400 Rh6CG299300 Rh6DG291200 Rh7AG028200 Rh7BG027100 Rh7BG173900 Rh7CG029000 Rh7DG028500
rosa_wichuraiana	Rw5G023500 Rw7G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccI	GTMKAC	2 cut(s)	266, 1055
AccII	CGCG	2 cut(s)	138, 247
AciI	CCGC	8 cut(s)	9, 35, 38, 57, 171, 196, 199, 643
AclWI	GGATC	2 cut(s)	209, 368
AcsI	RAATTY	2 cut(s)	529, 1015
AcuI	CTGAAG	2 cut(s)	456, 753
AcyI	GRCGYC	2 cut(s)	144, 168
AfaI	GTAC	4 cut(s)	131, 892, 897, 918
AfiI	CCNNNNNNNGG	5 cut(s)	63, 81, 431, 1011, 1233
AgsI	TTSAA	6 cut(s)	340, 689, 742, 952, 1021, 1220
AhdI	GACNNNNNGTC	1 cut(s)	1048
AjnI	CCWGG	2 cut(s)	62, 360
AluBI	AGCT	8 cut(s)	310, 541, 584, 767, 866, 880, 969, 1010
AluI	AGCT	8 cut(s)	310, 541, 584, 767, 866, 880, 969, 1010
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	3 cut(s)	47, 99, 513
AlwI	GGATC	2 cut(s)	209, 368
AoxI	GGCC	3 cut(s)	100, 157, 979
ApeKI	GCWGC	2 cut(s)	173, 584
ApoI	RAATTY	2 cut(s)	529, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	422, 980
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	139, 422
AvaII	GGWCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	160, 571
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	1 cut(s)	914
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	2 cut(s)	64, 362
BciVI	GTATCC	1 cut(s)	1234
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	3 cut(s)	47, 99, 513
BfaI	CTAG	2 cut(s)	161, 780
BfmI	CTRYAG	2 cut(s)	76, 558
BfuI	GTATCC	1 cut(s)	1234
BisI	GCNGC	5 cut(s)	38, 171, 174, 197, 585
BlsI	GCNGC	5 cut(s)	39, 172, 175, 198, 586
Bme1390I	CCNGG	3 cut(s)	64, 362, 453
Bme18I	GGWCC	1 cut(s)	422
BmeRI	GACNNNNNGTC	1 cut(s)	1048
BmgT120I	GGNCC	2 cut(s)	422, 980
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	3 cut(s)	64, 362, 453
BmrI	ACTGGG	3 cut(s)	441, 1048, 1063
BmsI	GCATC	3 cut(s)	595, 626, 742
BmuI	ACTGGG	3 cut(s)	441, 1048, 1063
BpmI	CTGGAG	2 cut(s)	344, 975
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	453
Bsa29I	ATCGAT	1 cut(s)	1207
BsaAI	YACGTR	1 cut(s)	920
BsaHI	GRCGYC	2 cut(s)	144, 168
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	349, 361, 451
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 81, 431, 1011, 1233
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	6 cut(s)	262, 436, 973, 992, 1043, 1069
Bse3DI	GCAATG	2 cut(s)	120, 373
BseBI	CCWGG	2 cut(s)	64, 362
BseCI	ATCGAT	1 cut(s)	1207
BseDI	CCNNGG	3 cut(s)	349, 361, 451
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	5 cut(s)	63, 81, 431, 1011, 1233
BseMI	GCAATG	2 cut(s)	120, 373
BseMII	CTCAG	2 cut(s)	843, 881
BseNI	ACTGG	6 cut(s)	262, 436, 973, 992, 1043, 1069
BseRI	GAGGAG	4 cut(s)	15, 18, 33, 1133
BseXI	GCAGC	2 cut(s)	160, 571
BseYI	CCCAGC	1 cut(s)	1010
Bsh1236I	CGCG	2 cut(s)	138, 247
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	102, 159, 981
BshNI	GGYRCC	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	1207
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	50, 82, 453, 719
BslFI	GGGAC	2 cut(s)	1050, 1055
BslI	CCNNNNNNNGG	5 cut(s)	63, 81, 431, 1011, 1233
BsmAI	GTCTC	3 cut(s)	47, 99, 513
BsmFI	GGGAC	2 cut(s)	1050, 1055
BsnI	GGCC	3 cut(s)	102, 159, 981
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	4 cut(s)	133, 201, 373, 1168
Bsp19I	CCATGG	1 cut(s)	349
Bsp68I	TCGCGA	2 cut(s)	138, 247
BspACI	CCGC	8 cut(s)	9, 35, 38, 57, 171, 196, 199, 643
BspANI	GGCC	3 cut(s)	102, 159, 981
BspCNI	CTCAG	2 cut(s)	844, 880
BspDI	ATCGAT	1 cut(s)	1207
BspFNI	CGCG	2 cut(s)	138, 247
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	209, 368
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	120, 373
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	6 cut(s)	262, 436, 973, 992, 1043, 1069
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	3 cut(s)	349, 361, 451
BssMI	GATC	4 cut(s)	133, 201, 373, 1168
BssNAI	GTATAC	1 cut(s)	267
BssNI	GRCGYC	2 cut(s)	144, 168
BssT1I	CCWWGG	1 cut(s)	349
Bst1107I	GTATAC	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	64, 362
Bst4CI	ACNGT	4 cut(s)	559, 895, 1046, 1064
Bst6I	CTCTTC	3 cut(s)	312, 548, 1108
BstACI	GRCGYC	2 cut(s)	144, 168
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	3 cut(s)	255, 852, 867
BstDSI	CCRYGG	1 cut(s)	349
BstENI	CCTNNNNNAGG	1 cut(s)	1231
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	2 cut(s)	138, 247
BstKTI	GATC	4 cut(s)	136, 204, 376, 1171
BstMAI	GTCTC	3 cut(s)	47, 99, 513
BstMBI	GATC	4 cut(s)	133, 201, 373, 1168
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 614
BstNI	CCWGG	2 cut(s)	64, 362
BstSCI	CCNGG	3 cut(s)	62, 360, 451
BstSFI	CTRYAG	2 cut(s)	76, 558
BstSNI	TACGTA	1 cut(s)	920
BstUI	CGCG	2 cut(s)	138, 247
BstV1I	GCAGC	2 cut(s)	160, 571
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZ17I	GTATAC	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	1207
BsuI	GTATCC	1 cut(s)	1234
BsuRI	GGCC	3 cut(s)	102, 159, 981
BsuTUI	ATCGAT	1 cut(s)	1207
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	555
BtuMI	TCGCGA	2 cut(s)	138, 247
Cac8I	GCNNGC	1 cut(s)	720
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	422, 980
ClaI	ATCGAT	1 cut(s)	1207
CseI	GACGC	2 cut(s)	133, 176
Csp6I	GTAC	4 cut(s)	130, 891, 896, 917
CviAII	CATG	4 cut(s)	350, 676, 884, 1024
CviQI	GTAC	4 cut(s)	130, 891, 896, 917
DdeI	CTNAG	3 cut(s)	255, 852, 867
DpnI	GATC	4 cut(s)	135, 203, 375, 1170
DpnII	GATC	4 cut(s)	133, 201, 373, 1168
DriI	GACNNNNNGTC	1 cut(s)	1048
Eam1104I	CTCTTC	3 cut(s)	312, 548, 1108
Eam1105I	GACNNNNNGTC	1 cut(s)	1048
EarI	CTCTTC	3 cut(s)	312, 548, 1108
EciI	GGCGGA	2 cut(s)	214, 658
Eco105I	TACGTA	1 cut(s)	920
Eco130I	CCWWGG	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	456, 753
EcoNI	CCTNNNNNAGG	1 cut(s)	1231
EcoRII	CCWGG	2 cut(s)	62, 360
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	353, 679, 887, 1027
FaqI	GGGAC	2 cut(s)	1050, 1055
FatI	CATG	4 cut(s)	349, 675, 883, 1023
FblI	GTMKAC	2 cut(s)	266, 1055
Fnu4HI	GCNGC	5 cut(s)	38, 171, 174, 197, 585
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	5 cut(s)	38, 171, 174, 197, 585
FspBI	CTAG	2 cut(s)	161, 780
GluI	GCNGC	5 cut(s)	38, 171, 174, 197, 585
GsaI	CCCAGC	1 cut(s)	1014
GsuI	CTGGAG	2 cut(s)	344, 975
HaeIII	GGCC	3 cut(s)	102, 159, 981
HapII	CCGG	4 cut(s)	50, 82, 453, 719
HgaI	GACGC	2 cut(s)	133, 176
Hin1I	GRCGYC	2 cut(s)	144, 168
Hin1II	CATG	4 cut(s)	353, 679, 887, 1027
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HinfI	GANTC	7 cut(s)	436, 563, 679, 776, 839, 1078, 1216
HpaII	CCGG	4 cut(s)	50, 82, 453, 719
HphI	GGTGA	2 cut(s)	139, 422
Hpy166II	GTNNAC	4 cut(s)	267, 386, 1036, 1056
Hpy188I	TCNGA	7 cut(s)	327, 378, 397, 441, 772, 870, 1077
Hpy188III	TCNNGA	5 cut(s)	137, 246, 474, 780, 1172
Hpy8I	GTNNAC	4 cut(s)	267, 386, 1036, 1056
Hpy99I	CGWCG	2 cut(s)	158, 170
HpyAV	CCTTC	4 cut(s)	134, 401, 492, 1024
HpyCH4III	ACNGT	4 cut(s)	559, 895, 1046, 1064
HpyCH4IV	ACGT	2 cut(s)	904, 919
HpyCH4V	TGCA	7 cut(s)	176, 428, 587, 608, 617, 659, 1240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 614
HpyF3I	CTNAG	3 cut(s)	255, 852, 867
HpySE526I	ACGT	2 cut(s)	904, 919
Hsp92I	GRCGYC	2 cut(s)	144, 168
Hsp92II	CATG	4 cut(s)	353, 679, 887, 1027
KroI	GCCGGC	1 cut(s)	718
KroNI	GCCGGC	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	133, 201, 373, 1168
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	5 cut(s)	116, 307, 557, 994, 1085
Lsp1109I	GCAGC	2 cut(s)	160, 571
LweI	GCATC	3 cut(s)	595, 626, 742
MaeI	CTAG	2 cut(s)	161, 780
MaeII	ACGT	2 cut(s)	904, 919
MaeIII	GTNAC	2 cut(s)	145, 994
MalI	GATC	4 cut(s)	135, 203, 375, 1170
MboI	GATC	4 cut(s)	133, 201, 373, 1168
MboII	GAAGA	8 cut(s)	329, 462, 535, 834, 1039, 1125, 1175, 1178
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	5 cut(s)	115, 529, 857, 937, 1015
MlyI	GAGTC	2 cut(s)	445, 785
Mph1103I	ATGCAT	1 cut(s)	619
MroNI	GCCGGC	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	2 cut(s)	216, 1212
MslI	CAYNNNNRTG	1 cut(s)	727
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	4 cut(s)	50, 82, 453, 719
MspR9I	CCNGG	3 cut(s)	64, 362, 453
MvaI	CCWGG	2 cut(s)	64, 362
MvnI	CGCG	2 cut(s)	138, 247
MwoI	GCNNNNNNNGC	2 cut(s)	108, 614
NaeI	GCCGGC	1 cut(s)	720
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	4 cut(s)	133, 201, 373, 1168
NgoMIV	GCCGGC	1 cut(s)	718
NlaIII	CATG	4 cut(s)	353, 679, 887, 1027
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	2 cut(s)	138, 247
NsiI	ATGCAT	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	720
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	5 cut(s)	563, 679, 839, 1078, 1216
PkrI	GCNGC	5 cut(s)	39, 172, 175, 198, 586
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	2 cut(s)	444, 784
PpsI	GAGTC	2 cut(s)	444, 784
Ppu21I	YACGTR	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	62, 360
PspFI	CCCAGC	1 cut(s)	1010
PspGI	CCWGG	2 cut(s)	62, 360
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	422, 980
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	136
RruI	TCGCGA	2 cut(s)	138, 247
RsaI	GTAC	4 cut(s)	131, 892, 897, 918
RsaNI	GTAC	4 cut(s)	130, 891, 896, 917
RseI	CAYNNNNRTG	1 cut(s)	727
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	216, 1212
SatI	GCNGC	5 cut(s)	38, 171, 174, 197, 585
Sau3AI	GATC	4 cut(s)	133, 201, 373, 1168
Sau96I	GGNCC	2 cut(s)	422, 980
SchI	GAGTC	2 cut(s)	445, 785
ScrFI	CCNGG	3 cut(s)	64, 362, 453
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	3 cut(s)	595, 626, 742
SfcI	CTRYAG	2 cut(s)	76, 558
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	727
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SnaBI	TACGTA	1 cut(s)	920
Sse9I	AATT	5 cut(s)	115, 529, 857, 937, 1015
SsiI	CCGC	8 cut(s)	9, 35, 38, 57, 171, 196, 199, 643
SspMI	CTAG	2 cut(s)	161, 780
StyD4I	CCNGG	3 cut(s)	62, 360, 451
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	4 cut(s)	559, 895, 1046, 1064
TaiI	ACGT	2 cut(s)	907, 922
TaqI	TCGA	2 cut(s)	482, 1207
TasI	AATT	5 cut(s)	115, 529, 857, 937, 1015
TatI	WGTACW	1 cut(s)	890
TauI	GCSGC	3 cut(s)	40, 173, 199
TfiI	GAWTC	5 cut(s)	563, 679, 839, 1078, 1216
Tru1I	TTAA	2 cut(s)	216, 1212
Tru9I	TTAA	2 cut(s)	216, 1212
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	173, 584
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	109, 594, 692, 1040
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	1231
XapI	RAATTY	2 cut(s)	529, 1015
XbaI	TCTAGA	1 cut(s)	779
XmiI	GTMKAC	2 cut(s)	266, 1055
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	2 cut(s)	161, 780
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.